BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0109800 Os03g0109800|AK066015
(218 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G33390.1 | chr4:16075282-16077706 FORWARD LENGTH=780 65 3e-11
AT2G26570.1 | chr2:11299565-11302076 FORWARD LENGTH=808 64 8e-11
AT5G42880.1 | chr5:17191758-17194091 FORWARD LENGTH=752 53 1e-07
AT1G45545.1 | chr1:17180615-17182957 REVERSE LENGTH=753 52 3e-07
>AT4G33390.1 | chr4:16075282-16077706 FORWARD LENGTH=780
Length = 779
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 53/91 (58%), Gaps = 7/91 (7%)
Query: 67 SVQTRIDTTAPIDSVKGAANKFGGSLDLR-------ERRKQAQDELDKVQEKVSECLKRS 119
S + IDT +P +SVK A +KFGG D + ERR + ELDK+QE++ E K+S
Sbjct: 151 SFRDSIDTASPFESVKEAVSKFGGITDWKAHRMKVLERRNFVEQELDKIQEEIPEYKKKS 210
Query: 120 QEAEAGRAQAVKELGGANGVIDELTLGLEMA 150
+ E + AV+EL +I+EL L LE A
Sbjct: 211 EMVEMSKMLAVEELESTKRLIEELKLNLEKA 241
>AT2G26570.1 | chr2:11299565-11302076 FORWARD LENGTH=808
Length = 807
Score = 63.5 bits (153), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 7/86 (8%)
Query: 72 IDTTAPIDSVKGAANKFGGSLDLR-------ERRKQAQDELDKVQEKVSECLKRSQEAEA 124
IDT AP +SVK A +KFGG D + ERRK ++EL K+ E++ E S+ AEA
Sbjct: 165 IDTAAPFESVKEAVSKFGGITDWKSHRMQAVERRKLIEEELKKIHEEIPEYKTHSETAEA 224
Query: 125 GRAQAVKELGGANGVIDELTLGLEMA 150
+ Q +KEL +I++L L L+ A
Sbjct: 225 AKLQVLKELESTKRLIEQLKLNLDKA 250
>AT5G42880.1 | chr5:17191758-17194091 FORWARD LENGTH=752
Length = 751
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 72 IDTTAPIDSVKGAANKFGGSLDLR-------ERRKQAQDELDKVQEKVSECLKRSQEAEA 124
IDT +P +SV+ A +KFGG D + ERRK +EL+K+QE + E + ++ AE
Sbjct: 134 IDTASPFESVREAVSKFGGITDWKAHKIQTIERRKMVDEELEKIQEAMPEYKREAELAEE 193
Query: 125 GRAQAVKELGGANGVI 140
+ A++EL G+I
Sbjct: 194 AKYDALEELENTKGLI 209
>AT1G45545.1 | chr1:17180615-17182957 REVERSE LENGTH=753
Length = 752
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 7/76 (9%)
Query: 72 IDTTAPIDSVKGAANKFGGSLDLR-------ERRKQAQDELDKVQEKVSECLKRSQEAEA 124
IDT AP +SVK A +KFGG D + ERRK EL+K+QE + + K++ AE
Sbjct: 155 IDTAAPFESVKEAVSKFGGITDWKAHKIQTIERRKTVDQELEKIQEDMPDYKKQAVVAEE 214
Query: 125 GRAQAVKELGGANGVI 140
+ Q V EL V+
Sbjct: 215 AKHQVVMELERTRNVV 230
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.131 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,126,001
Number of extensions: 155629
Number of successful extensions: 640
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 638
Number of HSP's successfully gapped: 4
Length of query: 218
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 123
Effective length of database: 8,502,049
Effective search space: 1045752027
Effective search space used: 1045752027
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 109 (46.6 bits)