Os03g0106000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function UPF0187 family protein.
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Os03g0106000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function UPF0187 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.4 | 0.323 | 12.7 | 0.912 | 1.2 | -1.13 | -0.479 | -1.08 | -0.0838 | 24 | 31.4 | 254 | -- | -- |
| 48.58 | 0.325 | 12.7 | 0.782 | 1.19 | -1.13 | -0.559 | -- | -0.0794 | 0.00442 | 32.39 | 252 | -- | -- |
| 48.33 | 0.324 | 12.7 | 0.966 | 1.2 | -1.11 | -- | -1.25 | -0.0662 | 23.9 | 31.5 | 234 | -- | -- |
| 50 | 0.329 | 12.7 | 0.746 | 1.2 | -1.17 | -- | -- | -0.124 | 0.0161 | 32.1 | 251 | -- | -- |
| 98.13 | 0.461 | 12.7 | 0.67 | -- | -1.66 | -- | -0.371 | -0.167 | -- | 50.51 | 829 | -- | -- |
| 64.52 | 0.377 | 12.6 | 0.995 | 1.11 | -- | -0.632 | -- | 0.0668 | 22.9 | -- | -- | -- | -- |
| 66.2 | 0.381 | 12.6 | 1.02 | 1.11 | -- | -- | -- | 0.0691 | 22.9 | -- | -- | -- | -- |
| 98.24 | 0.462 | 12.7 | 0.6 | -- | -1.67 | -- | -- | -0.185 | -- | 42.85 | 829 | -- | -- |
| 63.2 | 0.37 | 12.7 | -- | 1.26 | -1.48 | -- | -- | -0.269 | 0.357 | 31.7 | 252 | -- | -- |
| 142.49 | 0.558 | 12.6 | 1.04 | -- | -- | -- | -- | 0.0764 | -- | -- | -- | -- | -- |
| 93.68 | 0.453 | 12.7 | -- | 1.12 | -- | -- | -- | -0.0447 | 22.9 | -- | -- | -- | -- |
| 105.77 | 0.479 | 12.7 | -- | -- | -1.87 | -- | -- | -0.326 | -- | 30.43 | 851 | -- | -- |
| 171.27 | 0.611 | 12.6 | -- | -- | -- | -- | -- | -0.0395 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.98 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 23 |
| 10 | 46.89 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 21 |
| 28 | 47.25 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 23 |
| 31 | 47.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 32 | 47.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 2 | 23 |
| 33 | 47.41 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 53 | 47.69 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 93 | 48.09 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 111 | 48.33 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 127 | 48.48 | temperature | 15 | 4320 | > th | dose dependent | rect. | 20 | 1 |
| 128 | 48.48 | temperature | 30 | 4320 | < th | dose dependent | rect. | 20 | 1 |
| 141 | 48.57 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 143 | 48.58 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 173 | 48.71 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 286 | 49.01 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 323 | 49.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 334 | 49.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 368 | 49.17 | temperature | 30 | 270 | < th | dose dependent | sin | 2 | NA |
| 428 | 49.26 | temperature | 20 | 4320 | > th | dose dependent | rect. | 18 | 17 |
| 432 | 49.27 | temperature | 20 | 4320 | > th | dose dependent | sin | 15 | NA |
| 486 | 49.33 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 5 |
| 501 | 49.34 | temperature | 20 | 4320 | > th | dose dependent | rect. | 8 | 20 |
| 543 | 49.37 | temperature | 20 | 4320 | > th | dose dependent | rect. | 10 | 16 |
| 712 | 49.50 | temperature | 10 | 4320 | > th | dose dependent | sin | 18 | NA |
| 758 | 49.52 | temperature | 20 | 4320 | > th | dose dependent | no | NA | NA |
| 778 | 49.53 | temperature | 30 | 4320 | < th | dose dependent | sin | 17 | NA |
| 797 | 49.53 | temperature | 20 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 802 | 49.54 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 10 |
| 861 | 49.56 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 870 | 49.57 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 16 |
| 910 | 49.59 | temperature | 25 | 14400 | < th | dose independent | rect. | 19 | 3 |