BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0106000 Os03g0106000|AK063343
         (393 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G61320.1  | chr3:22694002-22695474 FORWARD LENGTH=411          349   1e-96
AT2G45870.1  | chr2:18875928-18877440 FORWARD LENGTH=411          340   8e-94

>AT3G61320.1 | chr3:22694002-22695474 FORWARD LENGTH=411
          Length = 410

 Score =  349 bits (896), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 191/345 (55%), Positives = 234/345 (67%), Gaps = 15/345 (4%)

Query: 49  AVPDWADAVSERRIRDRRPLYTHADWREXXXXXXXXXXXXXXXTSRVILSLAPPVSXXXX 108
           AVPDWAD + ER ++ +R LYTH  W E               +SRVILSL PPV     
Sbjct: 65  AVPDWADEIKERGMQQKRSLYTHEKWVEHRSSLRHVRHLLSSFSSRVILSLIPPVFFFTS 124

Query: 109 XXXXXXXYNTL-----LPAY--ALTASSLPYQLTAPALALLLVFRTEASYARFDEGRKAW 161
                  YN+      LP     L +SSLPYQLTAPALALLLVFRTEASY+R++EGRKAW
Sbjct: 125 VAVVIASYNSAVALDWLPGIFPILRSSSLPYQLTAPALALLLVFRTEASYSRYEEGRKAW 184

Query: 162 MRVIXXXXXXXXXXMRHHNPPATRA-----LLNYILAFPLALKCHIICHSDIKRDLQGLL 216
           + +I          +   +           LL YI AFP+ALKCH+I  SDI RDL+ L+
Sbjct: 185 VGIIAGTNDLARQVICSVDSSGDELIIKDLLLRYIAAFPVALKCHVIYGSDIARDLRNLI 244

Query: 217 SEDDLNVVLRSKHRPRCIIEFISQSLYMLDFDENKRNIMESKLSCFLEGISVCEQLIGIP 276
             DDL+++L++KHRPRC+IEFISQS+ +L  D+ KR+++ESK+    EGI VCEQL+GIP
Sbjct: 245 EADDLSLILQAKHRPRCVIEFISQSIQLLKLDDAKRDLLESKMLHLHEGIGVCEQLMGIP 304

Query: 277 IPLSYTRLTSRFLVLWHLTLPVILWDECKWIVVPATFISAASLFCIEEVGVLIEEPFPML 336
           IPLSYTRLTSRFLV WHLTLP+ILWDEC WIVVPATFISAASLFCIEEVGVLIEEPFPML
Sbjct: 305 IPLSYTRLTSRFLVFWHLTLPIILWDECHWIVVPATFISAASLFCIEEVGVLIEEPFPML 364

Query: 337 ALDELCKQLHDSTQDVMSVQNLVHNRLAAKTKDQDSGSMRCSDNG 381
           ALDELC  +H + Q+ +  + ++ NR+ AK K  +    + S NG
Sbjct: 365 ALDELCDLVHSNIQEAVKSEKVIRNRIIAKIKLHE---FKHSSNG 406



>AT2G45870.1 | chr2:18875928-18877440 FORWARD LENGTH=411
          Length = 410

 Score =  340 bits (872), Expect = 8e-94,   Method: Compositional matrix adjust.
 Identities = 194/394 (49%), Positives = 248/394 (62%), Gaps = 17/394 (4%)

Query: 5   PRPIPSIHRQPPKPTTTHVA-RCFRDPPKAPDXXXXXXXXXXXXXAVPDWADAVSERRIR 63
           PR    I  + PK         C    PK+ D             AVP+W+D + ERR++
Sbjct: 21  PRLYSGISARAPKSLHFKFNPSCVSSGPKSDDSPLSEKLISLLK-AVPNWSDGIKERRMQ 79

Query: 64  DRRPLYTHADWREXXXXXXXXXXXXXXXTSRVILSLAPPVSXXXXXXXXXXXYNTL---- 119
            +R LYTH +W                 +SRVILSL PPV            YN+     
Sbjct: 80  QKRSLYTHENWVRHRSSLRHLRHVSSSPSSRVILSLIPPVFFFTTVAILIAGYNSAVDLD 139

Query: 120 -LPAY--ALTASSLPYQLTAPALALLLVFRTEASYARFDEGRKAWMRVIXXXXXXXXXXM 176
            LP +   L AS LPYQLTAPALALLLVFRTEASY+RF++GRKAW+++I          +
Sbjct: 140 WLPDFFPVLRASPLPYQLTAPALALLLVFRTEASYSRFEQGRKAWVKIISGTNDLARLVI 199

Query: 177 RHHNPPATR-----ALLNYILAFPLALKCHIICHSDIKRDLQGLLSEDDLNVVLRSKHRP 231
              +          ALL YI+AFP+ALKCH+I  SDI  DL+ ++  DDL+++L+SKHRP
Sbjct: 200 SSVHGSGDELIIRDALLRYIVAFPVALKCHVIYGSDIASDLKNVIEVDDLSLILQSKHRP 259

Query: 232 RCIIEFISQSLYMLDFDENKRNIMESKLSCFLEGISVCEQLIGIPIPLSYTRLTSRFLVL 291
           RC+I+FISQSL +L+ D  K +++E+K+    EGI VCEQL+GIPIPLSYTRLTSRFLVL
Sbjct: 260 RCVIQFISQSLQLLNLDSTKIDMLETKMMQLQEGIGVCEQLMGIPIPLSYTRLTSRFLVL 319

Query: 292 WHLTLPVILWDECKWIVVPATFISAASLFCIEEVGVLIEEPFPMLALDELCKQLHDSTQD 351
           WHLTLPVILWD+C W VVPATFISAASLFCIEEVGVLIEEPF MLALDELC  +  ++ +
Sbjct: 320 WHLTLPVILWDDCHWNVVPATFISAASLFCIEEVGVLIEEPFSMLALDELCAMVLSNSDE 379

Query: 352 VMSVQNLVHNRLAAKTKDQDSGSMRCSDNGWPSS 385
            +  + ++ NR+ AK +  +   ++ S NGW  S
Sbjct: 380 AVESKEVIRNRIIAKKRILE---IKHSSNGWHKS 410



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.323    0.136    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,779,055
Number of extensions: 297104
Number of successful extensions: 853
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 848
Number of HSP's successfully gapped: 2
Length of query: 393
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 292
Effective length of database: 8,337,553
Effective search space: 2434565476
Effective search space used: 2434565476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)