BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0106000 Os03g0106000|AK063343
(393 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os03g0106000 Protein of unknown function UPF0187 family pro... 668 0.0
AK064974 148 8e-36
>Os03g0106000 Protein of unknown function UPF0187 family protein
Length = 393
Score = 668 bits (1723), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/393 (87%), Positives = 344/393 (87%)
Query: 1 MAAPPRPIPSIHRQPPKPTTTHVARCFRDPPKAPDXXXXXXXXXXXXXAVPDWADAVSER 60
MAAPPRPIPSIHRQPPKPTTTHVARCFRDPPKAPD AVPDWADAVSER
Sbjct: 1 MAAPPRPIPSIHRQPPKPTTTHVARCFRDPPKAPDTNSNTNPLLSLLSAVPDWADAVSER 60
Query: 61 RIRDRRPLYTHADWREXXXXXXXXXXXXXXXTSRVILSLAPPVSXXXXXXXXXXXYNTLL 120
RIRDRRPLYTHADWRE TSRVILSLAPPVS YNTLL
Sbjct: 61 RIRDRRPLYTHADWREHRSSRRHLRHLLSSLTSRVILSLAPPVSAFTAFAAAIATYNTLL 120
Query: 121 PAYALTASSLPYQLTAPALALLLVFRTEASYARFDEGRKAWMRVIXXXXXXXXXXMRHHN 180
PAYALTASSLPYQLTAPALALLLVFRTEASYARFDEGRKAWMRVI MRHHN
Sbjct: 121 PAYALTASSLPYQLTAPALALLLVFRTEASYARFDEGRKAWMRVIAAAADLAGMAMRHHN 180
Query: 181 PPATRALLNYILAFPLALKCHIICHSDIKRDLQGLLSEDDLNVVLRSKHRPRCIIEFISQ 240
PPATRALLNYILAFPLALKCHIICHSDIKRDLQGLLSEDDLNVVLRSKHRPRCIIEFISQ
Sbjct: 181 PPATRALLNYILAFPLALKCHIICHSDIKRDLQGLLSEDDLNVVLRSKHRPRCIIEFISQ 240
Query: 241 SLYMLDFDENKRNIMESKLSCFLEGISVCEQLIGIPIPLSYTRLTSRFLVLWHLTLPVIL 300
SLYMLDFDENKRNIMESKLSCFLEGISVCEQLIGIPIPLSYTRLTSRFLVLWHLTLPVIL
Sbjct: 241 SLYMLDFDENKRNIMESKLSCFLEGISVCEQLIGIPIPLSYTRLTSRFLVLWHLTLPVIL 300
Query: 301 WDECKWIVVPATFISAASLFCIEEVGVLIEEPFPMLALDELCKQLHDSTQDVMSVQNLVH 360
WDECKWIVVPATFISAASLFCIEEVGVLIEEPFPMLALDELCKQLHDSTQDVMSVQNLVH
Sbjct: 301 WDECKWIVVPATFISAASLFCIEEVGVLIEEPFPMLALDELCKQLHDSTQDVMSVQNLVH 360
Query: 361 NRLAAKTKDQDSGSMRCSDNGWPSSKSEQAKID 393
NRLAAKTKDQDSGSMRCSDNGWPSSKSEQAKID
Sbjct: 361 NRLAAKTKDQDSGSMRCSDNGWPSSKSEQAKID 393
>AK064974
Length = 127
Score = 148 bits (373), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 76/104 (73%), Positives = 76/104 (73%)
Query: 1 MAAPPRPIPSIHRQPPKPTTTHVARCFRDPPKAPDXXXXXXXXXXXXXAVPDWADAVSER 60
MAAPPRPIPSIHRQPPKPTTTHVARCFRDPPKAPD AVPDWADAVSER
Sbjct: 1 MAAPPRPIPSIHRQPPKPTTTHVARCFRDPPKAPDTNSNTNPLLSLLSAVPDWADAVSER 60
Query: 61 RIRDRRPLYTHADWREXXXXXXXXXXXXXXXTSRVILSLAPPVS 104
RIRDRRPLYTHADWRE TSRVILSLAPPVS
Sbjct: 61 RIRDRRPLYTHADWREHRSSRRHLRHLLSSLTSRVILSLAPPVS 104
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.136 0.427
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,771,780
Number of extensions: 493377
Number of successful extensions: 1709
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1709
Number of HSP's successfully gapped: 2
Length of query: 393
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 290
Effective length of database: 11,657,759
Effective search space: 3380750110
Effective search space used: 3380750110
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)