Os03g0100400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to DNA repair endonuclease UVH1 (EC 3.1.-.-) (Ultraviolet hypersensitive 1) (AtRAD1) (DNA excision repair protein XP-F homolog).
FiT-DB / Search/ Help/ Sample detail
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Os03g0100400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to DNA repair endonuclease UVH1 (EC 3.1.-.-) (Ultraviolet hypersensitive 1) (AtRAD1) (DNA excision repair protein XP-F homolog).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 38.74 | 0.292 | 8.24 | 0.673 | 0.18 | -0.231 | -0.933 | -1.9 | 0.376 | 2.8 | 24.76 | 1217 | -- | -- |
| 42.81 | 0.305 | 8.31 | 0.0568 | 0.209 | -0.347 | -0.56 | -- | 0.182 | 2.3 | 22.41 | 2669 | -- | -- |
| 40.93 | 0.298 | 8.24 | 0.643 | 0.232 | -0.282 | -- | -1.87 | 0.382 | 3.36 | 25 | 1769 | -- | -- |
| 43.98 | 0.309 | 8.31 | 0.064 | 0.2 | -0.379 | -- | -- | 0.175 | 2.81 | 22.27 | 2582 | -- | -- |
| 43.49 | 0.307 | 8.25 | 0.536 | -- | -0.38 | -- | -1.64 | 0.336 | -- | 24.9 | 2601 | -- | -- |
| 47.27 | 0.322 | 8.28 | 0.212 | 0.236 | -- | -0.663 | -- | 0.316 | 3 | -- | -- | -- | -- |
| 48.74 | 0.327 | 8.28 | 0.227 | 0.233 | -- | -- | -- | 0.32 | 2.96 | -- | -- | -- | -- |
| 46.07 | 0.316 | 8.31 | 0.0918 | -- | -0.429 | -- | -- | 0.222 | -- | 24.8 | 4036 | -- | -- |
| 44.03 | 0.309 | 8.31 | -- | 0.202 | -0.384 | -- | -- | 0.174 | 3.22 | 22.3 | 2555 | -- | -- |
| 51.86 | 0.337 | 8.27 | 0.237 | -- | -- | -- | -- | 0.326 | -- | -- | -- | -- | -- |
| 50.1 | 0.331 | 8.28 | -- | 0.237 | -- | -- | -- | 0.295 | 2.96 | -- | -- | -- | -- |
| 45.62 | 0.315 | 8.31 | -- | -- | -0.513 | -- | -- | 0.187 | -- | 24.78 | 2743 | -- | -- |
| 53.34 | 0.341 | 8.28 | -- | -- | -- | -- | -- | 0.3 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.54 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 2 | 37.63 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 4 | 37.69 | temperature | 25 | 1440 | < th | dose independent | rect. | 24 | 12 |
| 5 | 37.69 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 9 |
| 10 | 37.84 | temperature | 20 | 720 | > th | dose dependent | sin | 6 | NA |
| 43 | 38.12 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 13 |
| 69 | 38.30 | temperature | 25 | 1440 | < th | dose independent | sin | 6 | NA |
| 97 | 38.45 | temperature | 25 | 720 | > th | dose independent | sin | 6 | NA |
| 110 | 38.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 5 | 7 |
| 152 | 38.67 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 167 | 38.72 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 4 |
| 168 | 38.72 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 4 |
| 169 | 38.73 | temperature | 25 | 4320 | < th | dose independent | rect. | 21 | 7 |
| 174 | 38.75 | temperature | 25 | 4320 | > th | dose independent | rect. | 21 | 6 |
| 196 | 38.79 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 18 |
| 223 | 38.86 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 250 | 38.91 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 21 |
| 331 | 39.06 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 21 |
| 367 | 39.12 | temperature | 25 | 1440 | < th | dose independent | rect. | 23 | 22 |
| 411 | 39.18 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 7 |
| 441 | 39.22 | temperature | 25 | 1440 | > th | dose independent | rect. | 23 | 22 |
| 467 | 39.25 | temperature | 25 | 720 | < th | dose dependent | sin | 1 | NA |
| 488 | 39.27 | temperature | 25 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 490 | 39.27 | temperature | 25 | 1440 | < th | dose dependent | sin | 4 | NA |
| 493 | 39.28 | temperature | 25 | 1440 | < th | dose independent | no | NA | NA |
| 504 | 39.29 | temperature | 25 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 506 | 39.29 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 514 | 39.30 | temperature | 25 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 546 | 39.34 | temperature | 25 | 1440 | > th | dose independent | no | NA | NA |
| 557 | 39.35 | temperature | 25 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 573 | 39.36 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 606 | 39.40 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 620 | 39.41 | temperature | 25 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 633 | 39.42 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 641 | 39.43 | temperature | 25 | 1440 | < th | dose independent | rect. | 3 | 23 |
| 664 | 39.45 | temperature | 20 | 90 | > th | dose dependent | rect. | 5 | 22 |
| 665 | 39.46 | temperature | 25 | 1440 | > th | dose independent | rect. | 15 | 15 |
| 743 | 39.54 | temperature | 30 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 745 | 39.55 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 16 |
| 756 | 39.56 | temperature | 25 | 1440 | > th | dose independent | rect. | 13 | 18 |
| 782 | 39.57 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 820 | 39.60 | temperature | 10 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 984 | 39.73 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 15 |