BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0100400 Os03g0100400|AK121880
         (995 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G41150.1  | chr5:16473044-16476919 REVERSE LENGTH=957         1033   0.0  

>AT5G41150.1 | chr5:16473044-16476919 REVERSE LENGTH=957
          Length = 956

 Score = 1033 bits (2670), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 557/1014 (54%), Positives = 709/1014 (69%), Gaps = 80/1014 (7%)

Query: 2   LPFEEQVVADLLEDPNGGLVVVSCGLPXXXXXXXXXXQLFHQSPDDGCFLILSAP--EPV 59
           L + +Q+++DLLED NGGL+++S GL            L   SP  G  L+L +P  + +
Sbjct: 3   LKYHQQIISDLLEDSNGGLLILSSGLSLAKLIASL---LILHSPSQGTLLLLLSPAAQSL 59

Query: 60  KAQIRRRXXXXXXXXXXXXXXXVHDVAPDLPAHHRVALYASRAALFLSPRALVADFLTXX 119
           K++I                    ++  DLPA+ R +LY S +  F++PR L+ D LT  
Sbjct: 60  KSRIIHYISSLDSPTPT-------EITADLPANQRYSLYTSGSPFFITPRILIVDLLTQR 112

Query: 120 XXXXXXXXXXXXXXXXXXDTSSDAFVARLLRH-HHLLPVYAFSDRPHAMVSGFAKAERAM 178
                             +TS++AF+ R+++  +    + AFSDRP AMVSGFAK ER M
Sbjct: 113 IPVSSLAGIFILNAHSISETSTEAFIIRIVKSLNSSAYIRAFSDRPQAMVSGFAKTERTM 172

Query: 179 KSLYIRRLHLWPRFHLLAAADLERSPPEVIDVRVPMTQPMRGIQAAILDAMDACLKELRR 238
           ++L++R++HLWPRF L  + +LER PPEV+D+RV M+  M GIQ AI++ MDACLKE+++
Sbjct: 173 RALFLRKIHLWPRFQLDVSQELEREPPEVVDIRVSMSNYMVGIQKAIIEVMDACLKEMKK 232

Query: 239 TNKVDVEDLTVDKGLFKSFDEIVRRQLDPIWHTLGKKTKQLVADLRTLRKLLDYLVRYDA 298
           TNKVDV+DLTV+ GLFKSFDEIVRRQLDPIWHTLGK+TKQLV+DL+TLRKLLDYLVRYDA
Sbjct: 233 TNKVDVDDLTVESGLFKSFDEIVRRQLDPIWHTLGKRTKQLVSDLKTLRKLLDYLVRYDA 292

Query: 299 VTYLKYLDTLRVSEGVRSVWIFADSSHKIFDLSKRRVYQVVRADGTKVAADNKGTPTXXX 358
           V++LK+LDTLRVSE  RSVW+FA+SS+KIFD +K+RVY++V+A   K     K       
Sbjct: 293 VSFLKFLDTLRVSESYRSVWLFAESSYKIFDFAKKRVYRLVKASDVKSKEHVKN------ 346

Query: 359 XXXXXXXXXXXETENEGSSDNKD---NTQKVNAEMGIVVEEILEEAPKWKVLRELLQEIA 415
                      +  ++G +D+ +        N   G+VVEE+LEEAPKWKVLRE+L+E  
Sbjct: 347 -------KSGKKRNSKGETDSVEAVGGETATNVATGVVVEEVLEEAPKWKVLREILEETQ 399

Query: 416 EEQAKGDGDNVNPVHEDGINESGIVLVACKDERSCVQLQECISKGSHQVMRAEWEKYLLG 475
           EE+ K          ED  + +GIVLVACKDERSC+QL++CI+    +VMR EWE YLL 
Sbjct: 400 EERLKQAFS-----EEDNSDNNGIVLVACKDERSCMQLEDCITNNPQKVMREEWEMYLLS 454

Query: 476 KAELHGLHRKNKKTSQQLKGFGVLDGEVPMRSGESAGPVSISKVEANALLAAASEISTVT 535
           K EL  +    KK  +  KGFG+LDG VP+ + +++   S+ + E  AL+AAAS I  + 
Sbjct: 455 KIELRSMQTPQKKKQKTPKGFGILDGVVPVTTIQNSEGSSVGRQEHEALMAAASSIRKLG 514

Query: 536 KEANLADDSN--------VSCXXXXXXXXXXXXXXXXTMAKREASKLR------NRNTTE 581
           K  ++A  +N         SC                  AK++ + LR      N+ TT 
Sbjct: 515 KTTDMASGNNNPEPHVDKASCTKGK--------------AKKDPTSLRRSLRSCNKKTT- 559

Query: 582 HTDLEVEGQSGKTDEQAETDACKLSAEDDSASAPAVDKAANNLSAFGDSVDTEPLPPVQF 641
             + + E   G  +E+   +A        S SAP   + AN +   G     + LPPV F
Sbjct: 560 --NSKPEILPGPENEEKANEA--------STSAP---QEANAVRPSG----AKKLPPVHF 602

Query: 642 YALDSDQHVLDVWKPSVIIVYHPDITFVREIEVYKAENPSMKLKVYFLFYEDSAEVQKFE 701
           YAL+SDQ +LD+ KPSVIIVYHPD+ FVRE+EVYKAENP  KLKVYF+FY++S EVQKFE
Sbjct: 603 YALESDQPILDILKPSVIIVYHPDMGFVRELEVYKAENPLRKLKVYFIFYDESTEVQKFE 662

Query: 702 SSIRRENEAFESLIRQKSLMMIPVDQNGRCIGPTLANEPEALLSQNSLTRKAGGRKPLEK 761
           +SIRRENEAFESLIRQKS M+IPVDQ+G C+G   + E  A  +QNSLTRKAGGRK LEK
Sbjct: 663 ASIRRENEAFESLIRQKSSMIIPVDQDGLCMGSNSSTEFPASSTQNSLTRKAGGRKELEK 722

Query: 762 EMQVIVDMREFMSSLPNVLHQKGIRIIPVTLEVGDYVLSPLICVERKSIADLFQSFASGR 821
           E QVIVDMREFMSSLPNVLHQKG++IIPVTLEVGDY+LSP ICVERKSI DLFQSF SGR
Sbjct: 723 ETQVIVDMREFMSSLPNVLHQKGMKIIPVTLEVGDYILSPSICVERKSIQDLFQSFTSGR 782

Query: 822 LYNQIETMVRYYKIPVLLIEFSQDKSFSFQSASEIGDDVSPTNIISKLSLLVLHFPRLRI 881
           L++Q+E M RYY+IPVLLIEFSQDKSFSFQS+S+I DDV+P NIISKLSLLVLHFPRLR+
Sbjct: 783 LFHQVEMMSRYYRIPVLLIEFSQDKSFSFQSSSDISDDVTPYNIISKLSLLVLHFPRLRL 842

Query: 882 VWSRSLHATADIFLSLKTNQDEPDESKAMRVGVPSEDGVVENDVRAENYNTSAIEFLRRL 941
           +WSRSLHATA+IF +LK+NQDEPDE++A+RVGVPSE+G++END+RAENYNTSA+EFLRRL
Sbjct: 843 LWSRSLHATAEIFTTLKSNQDEPDETRAIRVGVPSEEGIIENDIRAENYNTSAVEFLRRL 902

Query: 942 PGVTDSNYRRIMEECNSLAELALLPVERLSELMGTQKGARMLKEFLDAKCPTML 995
           PGV+D+NYR IME+C SLAELA LPVE L+ELMG  K A+ L+EFLDAK PT+L
Sbjct: 903 PGVSDANYRSIMEKCKSLAELASLPVETLAELMGGHKVAKSLREFLDAKYPTLL 956



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 19,164,129
Number of extensions: 759481
Number of successful extensions: 2211
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2206
Number of HSP's successfully gapped: 1
Length of query: 995
Length of database: 11,106,569
Length adjustment: 108
Effective length of query: 887
Effective length of database: 8,145,641
Effective search space: 7225183567
Effective search space used: 7225183567
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 117 (49.7 bits)