BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os03g0100400 Os03g0100400|AK121880
         (995 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os03g0100400  Similar to DNA repair endonuclease UVH1 (EC 3....  1873   0.0  

>Os03g0100400 Similar to DNA repair endonuclease UVH1 (EC 3.1.-.-) (Ultraviolet
           hypersensitive 1) (AtRAD1) (DNA excision repair protein
           XP-F homolog)
          Length = 995

 Score = 1873 bits (4852), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 920/995 (92%), Positives = 920/995 (92%)

Query: 1   MLPFEEQVVADLLEDPNGGLVVVSCGLPXXXXXXXXXXQLFHQSPDDGCFLILSAPEPVK 60
           MLPFEEQVVADLLEDPNGGLVVVSCGLP          QLFHQSPDDGCFLILSAPEPVK
Sbjct: 1   MLPFEEQVVADLLEDPNGGLVVVSCGLPVASLASAVLLQLFHQSPDDGCFLILSAPEPVK 60

Query: 61  AQIRRRXXXXXXXXXXXXXXXVHDVAPDLPAHHRVALYASRAALFLSPRALVADFLTXXX 120
           AQIRRR               VHDVAPDLPAHHRVALYASRAALFLSPRALVADFLT   
Sbjct: 61  AQIRRRLLLNSQSQPPLLQLQVHDVAPDLPAHHRVALYASRAALFLSPRALVADFLTSRL 120

Query: 121 XXXXXXXXXXXXXXXXXDTSSDAFVARLLRHHHLLPVYAFSDRPHAMVSGFAKAERAMKS 180
                            DTSSDAFVARLLRHHHLLPVYAFSDRPHAMVSGFAKAERAMKS
Sbjct: 121 LPSRVRALLLLSAHRSSDTSSDAFVARLLRHHHLLPVYAFSDRPHAMVSGFAKAERAMKS 180

Query: 181 LYIRRLHLWPRFHLLAAADLERSPPEVIDVRVPMTQPMRGIQAAILDAMDACLKELRRTN 240
           LYIRRLHLWPRFHLLAAADLERSPPEVIDVRVPMTQPMRGIQAAILDAMDACLKELRRTN
Sbjct: 181 LYIRRLHLWPRFHLLAAADLERSPPEVIDVRVPMTQPMRGIQAAILDAMDACLKELRRTN 240

Query: 241 KVDVEDLTVDKGLFKSFDEIVRRQLDPIWHTLGKKTKQLVADLRTLRKLLDYLVRYDAVT 300
           KVDVEDLTVDKGLFKSFDEIVRRQLDPIWHTLGKKTKQLVADLRTLRKLLDYLVRYDAVT
Sbjct: 241 KVDVEDLTVDKGLFKSFDEIVRRQLDPIWHTLGKKTKQLVADLRTLRKLLDYLVRYDAVT 300

Query: 301 YLKYLDTLRVSEGVRSVWIFADSSHKIFDLSKRRVYQVVRADGTKVAADNKGTPTXXXXX 360
           YLKYLDTLRVSEGVRSVWIFADSSHKIFDLSKRRVYQVVRADGTKVAADNKGTPT     
Sbjct: 301 YLKYLDTLRVSEGVRSVWIFADSSHKIFDLSKRRVYQVVRADGTKVAADNKGTPTKKRKV 360

Query: 361 XXXXXXXXXETENEGSSDNKDNTQKVNAEMGIVVEEILEEAPKWKVLRELLQEIAEEQAK 420
                    ETENEGSSDNKDNTQKVNAEMGIVVEEILEEAPKWKVLRELLQEIAEEQAK
Sbjct: 361 ARASSRKGKETENEGSSDNKDNTQKVNAEMGIVVEEILEEAPKWKVLRELLQEIAEEQAK 420

Query: 421 GDGDNVNPVHEDGINESGIVLVACKDERSCVQLQECISKGSHQVMRAEWEKYLLGKAELH 480
           GDGDNVNPVHEDGINESGIVLVACKDERSCVQLQECISKGSHQVMRAEWEKYLLGKAELH
Sbjct: 421 GDGDNVNPVHEDGINESGIVLVACKDERSCVQLQECISKGSHQVMRAEWEKYLLGKAELH 480

Query: 481 GLHRKNKKTSQQLKGFGVLDGEVPMRSGESAGPVSISKVEANALLAAASEISTVTKEANL 540
           GLHRKNKKTSQQLKGFGVLDGEVPMRSGESAGPVSISKVEANALLAAASEISTVTKEANL
Sbjct: 481 GLHRKNKKTSQQLKGFGVLDGEVPMRSGESAGPVSISKVEANALLAAASEISTVTKEANL 540

Query: 541 ADDSNVSCXXXXXXXXXXXXXXXXTMAKREASKLRNRNTTEHTDLEVEGQSGKTDEQAET 600
           ADDSNVSC                TMAKREASKLRNRNTTEHTDLEVEGQSGKTDEQAET
Sbjct: 541 ADDSNVSCKKRSFGKGKGKGKFKKTMAKREASKLRNRNTTEHTDLEVEGQSGKTDEQAET 600

Query: 601 DACKLSAEDDSASAPAVDKAANNLSAFGDSVDTEPLPPVQFYALDSDQHVLDVWKPSVII 660
           DACKLSAEDDSASAPAVDKAANNLSAFGDSVDTEPLPPVQFYALDSDQHVLDVWKPSVII
Sbjct: 601 DACKLSAEDDSASAPAVDKAANNLSAFGDSVDTEPLPPVQFYALDSDQHVLDVWKPSVII 660

Query: 661 VYHPDITFVREIEVYKAENPSMKLKVYFLFYEDSAEVQKFESSIRRENEAFESLIRQKSL 720
           VYHPDITFVREIEVYKAENPSMKLKVYFLFYEDSAEVQKFESSIRRENEAFESLIRQKSL
Sbjct: 661 VYHPDITFVREIEVYKAENPSMKLKVYFLFYEDSAEVQKFESSIRRENEAFESLIRQKSL 720

Query: 721 MMIPVDQNGRCIGPTLANEPEALLSQNSLTRKAGGRKPLEKEMQVIVDMREFMSSLPNVL 780
           MMIPVDQNGRCIGPTLANEPEALLSQNSLTRKAGGRKPLEKEMQVIVDMREFMSSLPNVL
Sbjct: 721 MMIPVDQNGRCIGPTLANEPEALLSQNSLTRKAGGRKPLEKEMQVIVDMREFMSSLPNVL 780

Query: 781 HQKGIRIIPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQIETMVRYYKIPVLLI 840
           HQKGIRIIPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQIETMVRYYKIPVLLI
Sbjct: 781 HQKGIRIIPVTLEVGDYVLSPLICVERKSIADLFQSFASGRLYNQIETMVRYYKIPVLLI 840

Query: 841 EFSQDKSFSFQSASEIGDDVSPTNIISKLSLLVLHFPRLRIVWSRSLHATADIFLSLKTN 900
           EFSQDKSFSFQSASEIGDDVSPTNIISKLSLLVLHFPRLRIVWSRSLHATADIFLSLKTN
Sbjct: 841 EFSQDKSFSFQSASEIGDDVSPTNIISKLSLLVLHFPRLRIVWSRSLHATADIFLSLKTN 900

Query: 901 QDEPDESKAMRVGVPSEDGVVENDVRAENYNTSAIEFLRRLPGVTDSNYRRIMEECNSLA 960
           QDEPDESKAMRVGVPSEDGVVENDVRAENYNTSAIEFLRRLPGVTDSNYRRIMEECNSLA
Sbjct: 901 QDEPDESKAMRVGVPSEDGVVENDVRAENYNTSAIEFLRRLPGVTDSNYRRIMEECNSLA 960

Query: 961 ELALLPVERLSELMGTQKGARMLKEFLDAKCPTML 995
           ELALLPVERLSELMGTQKGARMLKEFLDAKCPTML
Sbjct: 961 ELALLPVERLSELMGTQKGARMLKEFLDAKCPTML 995



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 29,937,646
Number of extensions: 1179519
Number of successful extensions: 3078
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3076
Number of HSP's successfully gapped: 1
Length of query: 995
Length of database: 17,035,801
Length adjustment: 111
Effective length of query: 884
Effective length of database: 11,240,047
Effective search space: 9936201548
Effective search space used: 9936201548
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 161 (66.6 bits)