Os02g0831800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2.
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Os02g0831800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 105.99 | 0.484 | 11.2 | 1.46 | 2.1 | 0.902 | 0.837 | 0.953 | 0.427 | 19.2 | 20.52 | 1183 | -- | -- |
| 107.78 | 0.484 | 11.2 | 1.31 | 2.08 | 0.763 | 0.888 | -- | 0.425 | 19.2 | 20.6 | 1079 | -- | -- |
| 107.76 | 0.483 | 11.2 | 1.46 | 2.09 | 0.9 | -- | 0.962 | 0.434 | 19.3 | 20.55 | 1127 | -- | -- |
| 109.9 | 0.488 | 11.2 | 1.31 | 2.08 | 0.778 | -- | -- | 0.406 | 19.2 | 20.5 | 1068 | -- | -- |
| 318.66 | 0.831 | 11.2 | 1.51 | -- | 1.11 | -- | 1.35 | 0.337 | -- | 21.13 | 664 | -- | -- |
| 122.96 | 0.52 | 11.2 | 1.61 | 2.11 | -- | 0.932 | -- | 0.568 | 19.4 | -- | -- | -- | -- |
| 125.3 | 0.524 | 11.2 | 1.58 | 2.11 | -- | -- | -- | 0.569 | 19.4 | -- | -- | -- | -- |
| 240.06 | 0.722 | 11.2 | 1.1 | -- | 1.39 | -- | -- | 0.191 | -- | 26.28 | 419 | -- | -- |
| 122.98 | 0.516 | 11.3 | -- | 2.11 | 1.26 | -- | -- | 0.03 | 19.4 | 19.95 | 47520 | -- | -- |
| 362.69 | 0.89 | 11.1 | 1.55 | -- | -- | -- | -- | 0.535 | -- | -- | -- | -- | -- |
| 191.46 | 0.647 | 11.2 | -- | 2.1 | -- | -- | -- | 0.393 | 19.5 | -- | -- | -- | -- |
| 273.82 | 0.771 | 11.3 | -- | -- | 1.61 | -- | -- | -0.0459 | -- | 26.21 | 475 | -- | -- |
| 426.11 | 0.964 | 11.2 | -- | -- | -- | -- | -- | 0.363 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 93.61 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 10 |
| 8 | 95.68 | temperature | 10 | 270 | > th | dose dependent | sin | 4 | NA |
| 20 | 97.28 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 27 | 97.80 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 10 |
| 42 | 98.39 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 14 |
| 51 | 99.00 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 7 |
| 53 | 99.01 | temperature | 20 | 720 | < th | dose independent | rect. | 1 | 5 |
| 94 | 99.90 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 9 |
| 112 | 100.17 | temperature | 25 | 270 | < th | dose independent | rect. | 4 | 8 |
| 151 | 100.64 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 9 |
| 245 | 101.38 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 7 |
| 347 | 101.98 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 14 |
| 364 | 102.03 | humidity | 90 | 720 | > th | dose dependent | rect. | 23 | 1 |
| 410 | 102.23 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 9 |
| 417 | 102.25 | temperature | 20 | 720 | < th | dose independent | sin | 7 | NA |
| 436 | 102.33 | temperature | 20 | 720 | > th | dose independent | sin | 5 | NA |
| 584 | 102.95 | temperature | 25 | 270 | < th | dose dependent | rect. | 7 | 2 |
| 588 | 102.97 | temperature | 25 | 270 | > th | dose independent | rect. | 6 | 9 |
| 663 | 103.19 | temperature | 20 | 720 | < th | dose dependent | rect. | 3 | 2 |
| 688 | 103.27 | humidity | 90 | 720 | > th | dose dependent | rect. | 15 | 10 |