BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0831800 Os02g0831800|AK060519
         (378 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0831800  Similar to 3-hydroxy-3-methylglutaryl-coenzyme...   541   e-154

>Os02g0831800 Similar to 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2
          Length = 378

 Score =  541 bits (1394), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 288/363 (79%), Positives = 288/363 (79%)

Query: 16  CFPSTRHTLPGLXXXXXXXXXXXXXXIADPAPAFNSVTAFAPATVANLGPGFDFLGCAVA 75
           CFPSTRHTLPGL              IADPAPAFNSVTAFAPATVANLGPGFDFLGCAVA
Sbjct: 16  CFPSTRHTLPGLVSVRVSRRVKVAVAIADPAPAFNSVTAFAPATVANLGPGFDFLGCAVA 75

Query: 76  DASLSLGDTVTATLDPSLPPGTVAIASVTSPSRPTLADRLSRDPLRNCXXXXXXXXXXXL 135
           DASLSLGDTVTATLDPSLPPGTVAIASVTSPSRPTLADRLSRDPLRNC           L
Sbjct: 76  DASLSLGDTVTATLDPSLPPGTVAIASVTSPSRPTLADRLSRDPLRNCAGVAAIAALRAL 135

Query: 136 DVKSHAVSIHLTKXXXXXXXXXXXXXXXXXXXXXXXXXFGSLLHQDDLVLAGLESEKAVS 195
           DVKSHAVSIHLTK                         FGSLLHQDDLVLAGLESEKAVS
Sbjct: 136 DVKSHAVSIHLTKGLPLGSGLGSSAASAAAAAKAVDALFGSLLHQDDLVLAGLESEKAVS 195

Query: 196 GFHADNIAPAILGGFVLVRSYDPFHLIPLSSPPALRLHFVLVTPDFEAPTSKMRAALPKQ 255
           GFHADNIAPAILGGFVLVRSYDPFHLIPLSSPPALRLHFVLVTPDFEAPTSKMRAALPKQ
Sbjct: 196 GFHADNIAPAILGGFVLVRSYDPFHLIPLSSPPALRLHFVLVTPDFEAPTSKMRAALPKQ 255

Query: 256 VAVHQHVRNXXXXXXXXXXXXXGDATLIGSAMSSDGIVEPTRAPLIPGMXXXXXXXXXXX 315
           VAVHQHVRN             GDATLIGSAMSSDGIVEPTRAPLIPGM           
Sbjct: 256 VAVHQHVRNSSQAAALVAAVLQGDATLIGSAMSSDGIVEPTRAPLIPGMAAVKAAALEAG 315

Query: 316 XLGCTISGAGPTAVAVIDGEEKGEEVGRRMVEAFANAGNLKATATVAQLDRVGARVISTS 375
            LGCTISGAGPTAVAVIDGEEKGEEVGRRMVEAFANAGNLKATATVAQLDRVGARVISTS
Sbjct: 316 ALGCTISGAGPTAVAVIDGEEKGEEVGRRMVEAFANAGNLKATATVAQLDRVGARVISTS 375

Query: 376 TLE 378
           TLE
Sbjct: 376 TLE 378



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.318    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,102,186
Number of extensions: 370539
Number of successful extensions: 1135
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1134
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 275
Effective length of database: 11,657,759
Effective search space: 3205883725
Effective search space used: 3205883725
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)