BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0831800 Os02g0831800|AK060519
         (378 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G17265.1  | chr2:7508606-7509718 FORWARD LENGTH=371            306   8e-84
AT4G35295.1  | chr4:16795333-16796223 FORWARD LENGTH=112           64   2e-10

>AT2G17265.1 | chr2:7508606-7509718 FORWARD LENGTH=371
          Length = 370

 Score =  306 bits (785), Expect = 8e-84,   Method: Compositional matrix adjust.
 Identities = 166/331 (50%), Positives = 202/331 (61%), Gaps = 9/331 (2%)

Query: 44  DPAPAFNSVTAFAPATVANLGPGFDFLGCAVADASLSLGDTVTATLDPSLPPGTVAIASV 103
           +P P F SV  FAPATVANLGPGFDFLGCAV      LGD VT  +DPS+  G V+I+ +
Sbjct: 46  EPEPVFVSVKTFAPATVANLGPGFDFLGCAVD----GLGDHVTLRVDPSVRAGEVSISEI 101

Query: 104 TSPSRPTLADRLSRDPLRNCXXXXXXXXXXXLDVKSHAVSIHLTKXXXXXXXXXXXXXXX 163
           T  +      +LS +PLRNC           L ++S  +S+ L K               
Sbjct: 102 TGTT-----TKLSTNPLRNCAGIAAIATMKMLGIRSVGLSLDLHKGLPLGSGLGSSAASA 156

Query: 164 XXXXXXXXXXFGSLLHQDDLVLAGLESEKAVSGFHADNIAPAILGGFVLVRSYDPFHLIP 223
                     FG  L  D LVLAGLESE  VSG+HADNIAPAI+GGFVL+R+Y+P  L P
Sbjct: 157 AAAAVAVNEIFGRKLGSDQLVLAGLESEAKVSGYHADNIAPAIMGGFVLIRNYEPLDLKP 216

Query: 224 LSSPPALRLHFVLVTPDFEAPTSKMRAALPKQVAVHQHVRNXXXXXXXXXXXXXGDATLI 283
           L  P    L FVLV+PDFEAPT KMRAALP ++ +  HV N             GDA ++
Sbjct: 217 LRFPSDKDLFFVLVSPDFEAPTKKMRAALPTEIPMVHHVWNSSQAAALVAAVLEGDAVML 276

Query: 284 GSAMSSDGIVEPTRAPLIPGMXXXXXXXXXXXXLGCTISGAGPTAVAVIDGEEKGEEVGR 343
           G A+SSD IVEPTRAPLIPGM             GCTISGAGPTAVAVID EEKG+ +G 
Sbjct: 277 GKALSSDKIVEPTRAPLIPGMEAVKKAALEAGAFGCTISGAGPTAVAVIDSEEKGQVIGE 336

Query: 344 RMVEAFANAGNLKATATVAQLDRVGARVIST 374
           +MVEAF   G+LK+ A+V +LD VGAR++++
Sbjct: 337 KMVEAFWKVGHLKSVASVKKLDNVGARLVNS 367



>AT4G35295.1 | chr4:16795333-16796223 FORWARD LENGTH=112
          Length = 111

 Score = 63.5 bits (153), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 29/48 (60%), Positives = 38/48 (79%)

Query: 327 TAVAVIDGEEKGEEVGRRMVEAFANAGNLKATATVAQLDRVGARVIST 374
           TAVAVID  EKG E+G +MV+ F   GNLK+TA+V +LD+VGAR+I +
Sbjct: 63  TAVAVIDTAEKGYEIGEKMVQVFLKIGNLKSTASVKKLDKVGARLIES 110



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.318    0.134    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,867,323
Number of extensions: 196687
Number of successful extensions: 400
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 397
Number of HSP's successfully gapped: 2
Length of query: 378
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 278
Effective length of database: 8,364,969
Effective search space: 2325461382
Effective search space used: 2325461382
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)