Os02g0828500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os02g0828500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.22 | 0.688 | 7.63 | -2.41 | 0.231 | -3.03 | -2.33 | -1.38 | -0.0529 | 12.6 | 30.01 | 11 | 16 | 16 |
| 218 | 0.688 | 7.6 | -2.43 | 0.143 | -2.89 | -2 | -- | 0.0503 | 11.9 | 31.36 | 12 | 16 | 15.9 |
| 219.77 | 0.69 | 7.67 | -2.59 | 0.217 | -3 | -- | 0.984 | -0.138 | 12.9 | 30.21 | 16 | 16.3 | 15.6 |
| 223.09 | 0.696 | 7.65 | -2.6 | 0.176 | -3.02 | -- | -- | -0.0933 | 13.3 | 30.36 | 16 | 16 | 15.9 |
| 219.23 | 0.69 | 7.66 | -2.7 | -- | -3.19 | -- | 1.21 | -0.121 | -- | 30.89 | 14 | 16.3 | 15.6 |
| 294.28 | 0.804 | 7.55 | -2.22 | 1.88 | -- | -1.8 | -- | 0.238 | 13.3 | -- | -- | -- | -- |
| 307.43 | 0.821 | 7.56 | -2.28 | 1.88 | -- | -- | -- | 0.229 | 13.4 | -- | -- | -- | -- |
| 223.38 | 0.696 | 7.66 | -2.62 | -- | -3.22 | -- | -- | -0.0959 | -- | 30.68 | 13 | 16.6 | 15.4 |
| 394.7 | 0.925 | 7.56 | -- | 0.139 | -2.69 | -- | -- | 0.332 | 14.4 | 33.55 | 10 | 16.3 | 15.6 |
| 525.22 | 1.07 | 7.59 | -2.35 | -- | -- | -- | -- | 0.19 | -- | -- | -- | -- | -- |
| 444.15 | 0.986 | 7.5 | -- | 1.92 | -- | -- | -- | 0.483 | 13.4 | -- | -- | -- | -- |
| 396.01 | 0.927 | 7.55 | -- | -- | -2.8 | -- | -- | 0.337 | -- | 33.85 | 9 | 16.3 | 15.6 |
| 671.07 | 1.21 | 7.53 | -- | -- | -- | -- | -- | 0.45 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 216.09 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 16 |
| 22 | 222.94 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 14 | 18 |
| 32 | 224.53 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 19 | 13 |
| 50 | 227.06 | radiation | 10.0 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 54 | 227.35 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 12 | 20 |
| 87 | 230.27 | temperature | 25.0 | 30 | < th | dose independent | rect. | 16 | 16 |
| 152 | 233.22 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 13 |
| 173 | 233.85 | temperature | 30.0 | 90 | < th | dose dependent | sin | 10 | NA |
| 191 | 234.46 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 18 | 7 |
| 234 | 235.25 | temperature | 20.0 | 90 | > th | dose independent | rect. | 20 | 15 |
| 254 | 235.76 | atmosphere | 1005.0 | 14400 | < th | dose independent | rect. | 22 | 1 |
| 270 | 236.17 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 19 | 4 |
| 278 | 236.36 | temperature | 15.0 | 30 | > th | dose dependent | sin | 10 | NA |
| 287 | 236.49 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 24 | 22 |
| 309 | 236.88 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 14 |
| 329 | 237.48 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 6 |
| 408 | 239.31 | wind | 7.0 | 14400 | > th | dose dependent | rect. | 19 | 2 |
| 413 | 239.43 | wind | 7.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 419 | 239.47 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 16 |
| 424 | 239.58 | wind | 9.0 | 14400 | > th | dose independent | rect. | 19 | 3 |
| 427 | 239.58 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 19 | 6 |
| 438 | 239.66 | wind | 9.0 | 14400 | > th | dose independent | rect. | 19 | 6 |
| 450 | 239.79 | temperature | 20.0 | 720 | > th | dose independent | rect. | 13 | 10 |
| 453 | 239.81 | wind | 7.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 484 | 240.29 | atmosphere | 1005.0 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 517 | 240.59 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 17 | 2 |
| 569 | 241.22 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 594 | 241.54 | temperature | 20.0 | 10 | > th | dose dependent | rect. | 20 | 6 |
| 607 | 241.65 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 22 | 7 |
| 689 | 242.82 | temperature | 25.0 | 90 | < th | dose independent | sin | 11 | NA |
| 703 | 242.94 | temperature | 10.0 | 720 | > th | dose dependent | rect. | 13 | 11 |
| 777 | 243.58 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 6 |
| 833 | 243.97 | temperature | 20.0 | 270 | > th | dose independent | rect. | 3 | 22 |
| 858 | 244.20 | temperature | 25.0 | 90 | > th | dose independent | sin | 11 | NA |
| 909 | 244.60 | temperature | 20.0 | 10 | > th | dose independent | sin | 9 | NA |
| 913 | 244.67 | temperature | 20.0 | 720 | > th | dose independent | rect. | 11 | 13 |
| 928 | 244.76 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 935 | 244.79 | temperature | 20.0 | 10 | > th | dose independent | rect. | 6 | 20 |
| 946 | 244.83 | temperature | 25.0 | 30 | < th | dose dependent | no | NA | NA |
| 955 | 244.87 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 23 |
| 956 | 244.87 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 968 | 244.93 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 980 | 245.02 | temperature | 25.0 | 30 | < th | dose dependent | rect. | 19 | 23 |