BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0828500 Os02g0828500|AK105163
         (414 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0828500  Tetratricopeptide-like helical domain containi...   781   0.0  
AK072058                                                          468   e-132

>Os02g0828500 Tetratricopeptide-like helical domain containing protein
          Length = 414

 Score =  781 bits (2017), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 394/414 (95%), Positives = 394/414 (95%)

Query: 1   MEXXXXXXXXXXXRPFLRGDLSQVDPELPSLVSVLCDAGAGECYHKHGTFLAHLIDVYRI 60
           ME           RPFLRGDLSQVDPELPSLVSVLCDAGAGECYHKHGTFLAHLIDVYRI
Sbjct: 1   MEKKKVDAVVAAARPFLRGDLSQVDPELPSLVSVLCDAGAGECYHKHGTFLAHLIDVYRI 60

Query: 61  LRLWGAPDAVARCGLYHSAYSNSYVNLAIFQPDVARDHVRGIIGAAAERLVHLFCVVPRH 120
           LRLWGAPDAVARCGLYHSAYSNSYVNLAIFQPDVARDHVRGIIGAAAERLVHLFCVVPRH
Sbjct: 61  LRLWGAPDAVARCGLYHSAYSNSYVNLAIFQPDVARDHVRGIIGAAAERLVHLFCVVPRH 120

Query: 121 QLMHDDLHLRYTDAELTAHLAASQASLDAARKSGGGGGDPGEAWRAKLASVVPPEGVVAR 180
           QLMHDDLHLRYTDAELTAHLAASQASLDAARKSGGGGGDPGEAWRAKLASVVPPEGVVAR
Sbjct: 121 QLMHDDLHLRYTDAELTAHLAASQASLDAARKSGGGGGDPGEAWRAKLASVVPPEGVVAR 180

Query: 181 HIRTGEAVALSRRVLGVFIVMTIADFSDQYTDYQDKLFDNEDGRLEYRGDNWRAVWPGSG 240
           HIRTGEAVALSRRVLGVFIVMTIADFSDQYTDYQDKLFDNEDGRLEYRGDNWRAVWPGSG
Sbjct: 181 HIRTGEAVALSRRVLGVFIVMTIADFSDQYTDYQDKLFDNEDGRLEYRGDNWRAVWPGSG 240

Query: 241 KPGLWMSAMSRLAAVYRLIATDEEIRELTAGERSVVKREDAELELVIPPVFERCSKVLDA 300
           KPGLWMSAMSRLAAVYRLIATDEEIRELTAGERSVVKREDAELELVIPPVFERCSKVLDA
Sbjct: 241 KPGLWMSAMSRLAAVYRLIATDEEIRELTAGERSVVKREDAELELVIPPVFERCSKVLDA 300

Query: 301 AEQKEGRDLYWEAVCGEWEEGKTERLLRRSIEKNPFVGEPWLVLAQALLNSGHDXXXXXX 360
           AEQKEGRDLYWEAVCGEWEEGKTERLLRRSIEKNPFVGEPWLVLAQALLNSGHD      
Sbjct: 301 AEQKEGRDLYWEAVCGEWEEGKTERLLRRSIEKNPFVGEPWLVLAQALLNSGHDEEAEAA 360

Query: 361 XXXGVRLVVEWGSSWDKRMSWEGWVSWGRVLRDGAHRRQWPRTAWGIINLGLVK 414
              GVRLVVEWGSSWDKRMSWEGWVSWGRVLRDGAHRRQWPRTAWGIINLGLVK
Sbjct: 361 AEEGVRLVVEWGSSWDKRMSWEGWVSWGRVLRDGAHRRQWPRTAWGIINLGLVK 414



>AK072058 
          Length = 410

 Score =  468 bits (1203), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/380 (60%), Positives = 282/380 (74%), Gaps = 8/380 (2%)

Query: 41  GECYHKHGTFLAHLIDVYRILRLWGAPDAVARCGLYHSAYSNSYVNLAIFQPDVARDHVR 100
           GEC+HKHGTFLAHL+DV+RILRLWGAPDAVARCGLYHSAYSNSYVNLAIF+PDV RDHVR
Sbjct: 33  GECWHKHGTFLAHLLDVHRILRLWGAPDAVARCGLYHSAYSNSYVNLAIFEPDVGRDHVR 92

Query: 101 GIIGAAAERLVHLFCVVPRHQLMHDDLHLRYTDAELTAHLAASQASLDAARKSGGGGGDP 160
            I+GAAAERLVHLFCVVPRHQL+HDDL   Y D +L A LAAS+ASL  AR+  G     
Sbjct: 93  PIVGAAAERLVHLFCVVPRHQLIHDDLLFHYADQDLVADLAASEASLQDARR--GLFHHD 150

Query: 161 GEAWRAKLASVVPPEGVVARHIRTGEAVALSRRVLGVFIVMTIADFSDQYTDYQDKLFDN 220
           GEAWR K+  ++PP G+  +HIRTGE VALSRR+   F++MT+ADFSDQ  D+QD+LFDN
Sbjct: 151 GEAWRLKIQRLLPPHGITVKHIRTGEDVALSRRIAATFLLMTMADFSDQLFDWQDRLFDN 210

Query: 221 EDGRLEYRGDNWRAVWPGSGKPGLWMSAMSRLAAVYRLIATDEEIR--ELTAGERSVVKR 278
            +GRLE+ G+ W ++WPG+GKPGLW +++SR+ A+Y LI  +EEI   +           
Sbjct: 211 TNGRLEFSGNTWTSLWPGTGKPGLWTASISRMGALYSLIVREEEIHIAQRKHSNNGQEDD 270

Query: 279 EDAELELVIPPVFERCSKVLDAAEQKEGRDLYWEAVCGEWEEG----KTERLLRRSIEKN 334
            D ++ELVIPPVF  C++VL A +QK  RDLYW+AVC   E+     K E +LRR I +N
Sbjct: 271 RDEDIELVIPPVFNGCTQVLTADDQKAARDLYWDAVCSGGEDETDWRKVEEILRRCIGRN 330

Query: 335 PFVGEPWLVLAQALLNSGHDXXXXXXXXXGVRLVVEWGSSWDKRMSWEGWVSWGRVLRDG 394
           PFVGEP LVLAQ LLN             GV+L++EWGSSWDKRM WE WVSWGR +   
Sbjct: 331 PFVGEPHLVLAQVLLNMEMYEEAEEQIEAGVKLLLEWGSSWDKRMPWEAWVSWGRAMLIK 390

Query: 395 AHRRQWPRTAWGIINLGLVK 414
           A  + WP T++GI+++GLVK
Sbjct: 391 AKDKDWPHTSFGILSIGLVK 410



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 15,611,640
Number of extensions: 697661
Number of successful extensions: 3491
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 3487
Number of HSP's successfully gapped: 2
Length of query: 414
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 311
Effective length of database: 11,657,759
Effective search space: 3625563049
Effective search space used: 3625563049
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)