BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0828500 Os02g0828500|AK105163
         (414 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G19990.1  | chr3:6965671-6967102 FORWARD LENGTH=426            461   e-130

>AT3G19990.1 | chr3:6965671-6967102 FORWARD LENGTH=426
          Length = 425

 Score =  461 bits (1186), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/410 (54%), Positives = 291/410 (70%), Gaps = 11/410 (2%)

Query: 14  RPFLRGDLSQVDPELPSLVSVLCDAGAGECYHKHGTFLAHLIDVYRILRLWGAPDAVARC 73
           RPFLRG+L ++DP+LPSL++VL   GAGEC+HKHG+FL HLID+Y+IL+LW AP++V  C
Sbjct: 18  RPFLRGELEKIDPKLPSLIAVLKSVGAGECWHKHGSFLDHLIDIYKILKLWKAPESVCLC 77

Query: 74  GLYHSAYSNSYVNLAIFQPDVARDHVRGIIGAAAERLVHLFCVVPRHQLMHDDLHLRYTD 133
           GL+HSAYSNSYVNLAIF P   RD VR  +G AAE L+HLFCVVPR  L+HD+L  +Y+D
Sbjct: 78  GLFHSAYSNSYVNLAIFDPSTGRDVVRDHVGEAAESLIHLFCVVPRQTLIHDELLFKYSD 137

Query: 134 AELTAHLAASQASLDAARKSGGGGGDPGEAWRAKLASVVPPEGVVARHIRTGEAVALSRR 193
            EL  HL  S+ SL  A++ G   GD  E WR K+ ++VP  GVV +HI+TGE + +SRR
Sbjct: 138 CELVEHLDCSEVSLRNAKEKGIFDGD--EEWRKKINALVPENGVVVKHIKTGEEIVVSRR 195

Query: 194 VLGVFIVMTIADFSDQYTDYQDKLFDNEDGRLEYRGDNWRAVWPGSGKPGLWMSAMSRLA 253
           V+GVF++MT+ADFSDQ   +QD+LF N DGRLE+RG+N  A+WPG+GKPGLWM++ SR+ 
Sbjct: 196 VVGVFLLMTMADFSDQLFGFQDELFCNHDGRLEFRGNNVTALWPGNGKPGLWMNSNSRMG 255

Query: 254 AVYRLIATDEEI-----RELTAGERSVVKREDAELELVIPPVFERCSKVLDAAEQKEGRD 308
           A+Y LI  +EEI     R        V K  D +++LV+PPVF  C+KVLDA EQ E R+
Sbjct: 256 AIYSLIVREEEILMEERRRAFGSGFEVRKERDEDIDLVVPPVFSFCTKVLDAKEQIEARE 315

Query: 309 LYWEAVCGEW-EEGKTERLLRR---SIEKNPFVGEPWLVLAQALLNSGHDXXXXXXXXXG 364
           +YWE V  +  +EG  ER   R    IEKNPFVGEP ++L+Q  L              G
Sbjct: 316 MYWEVVSSDTSKEGYLERAEERLLGCIEKNPFVGEPHVLLSQVYLGKKRFKEAEREAEKG 375

Query: 365 VRLVVEWGSSWDKRMSWEGWVSWGRVLRDGAHRRQWPRTAWGIINLGLVK 414
           + L+++WGS WDKRMSWEGW++W RVL   +  + WP  +WGI+NLGLV+
Sbjct: 376 LLLLLQWGSPWDKRMSWEGWIAWVRVLLMKSQDQSWPDVSWGILNLGLVR 425



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,171,987
Number of extensions: 380395
Number of successful extensions: 937
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 934
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 313
Effective length of database: 8,337,553
Effective search space: 2609654089
Effective search space used: 2609654089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)