Os02g0814900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Probable nicotinate-nucleotide adenylyltransferase family protein.
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Os02g0814900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Probable nicotinate-nucleotide adenylyltransferase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 31.37 | 0.263 | 9.27 | -1.16 | 0.191 | -0.54 | -0.363 | 1.26 | -0.281 | 23.9 | 26.7 | 1545 | -- | -- |
| 32.41 | 0.265 | 9.23 | -0.922 | 0.197 | -0.732 | -0.386 | -- | -0.21 | 0.169 | 23.29 | 1532 | -- | -- |
| 31.91 | 0.263 | 9.27 | -1.14 | 0.192 | -0.537 | -- | 1.26 | -0.279 | 23.4 | 26.7 | 1512 | -- | -- |
| 32.92 | 0.267 | 9.23 | -0.913 | 0.183 | -0.726 | -- | -- | -0.204 | 23.3 | 23.2 | 1400 | -- | -- |
| 32.55 | 0.266 | 9.27 | -1.19 | -- | -0.593 | -- | 1.53 | -0.29 | -- | 29.3 | 999 | -- | -- |
| 38.22 | 0.29 | 9.2 | -0.719 | 0.194 | -- | -0.359 | -- | -0.0868 | 0.0726 | -- | -- | -- | -- |
| 38.75 | 0.292 | 9.2 | -0.705 | 0.197 | -- | -- | -- | -0.0847 | 23.7 | -- | -- | -- | -- |
| 34.43 | 0.273 | 9.23 | -0.905 | -- | -0.72 | -- | -- | -0.209 | -- | 23.4 | 1081 | -- | -- |
| 51.2 | 0.333 | 9.19 | -- | 0.162 | -0.201 | -- | -- | -0.0432 | 23.2 | 25.66 | 1080 | -- | -- |
| 41.19 | 0.3 | 9.2 | -0.699 | -- | -- | -- | -- | -0.0823 | -- | -- | -- | -- | -- |
| 51.83 | 0.337 | 9.19 | -- | 0.189 | -- | -- | -- | -0.0062 | 23.4 | -- | -- | -- | -- |
| 52.67 | 0.338 | 9.19 | -- | -- | -0.275 | -- | -- | -0.0579 | -- | 26.7 | 894 | -- | -- |
| 54.07 | 0.343 | 9.18 | -- | -- | -- | -- | -- | -0.00479 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 30.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 19 | 2 |
| 3 | 30.07 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 38 | 30.55 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 72 | 30.73 | temperature | 25 | 1440 | < th | dose dependent | sin | 16 | NA |
| 152 | 30.91 | temperature | 10 | 270 | > th | dose dependent | rect. | 17 | 22 |
| 243 | 31.08 | humidity | 80 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 275 | 31.14 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 298 | 31.17 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 379 | 31.27 | humidity | 80 | 43200 | > th | dose independent | rect. | 17 | 2 |
| 385 | 31.28 | temperature | 10 | 1440 | > th | dose dependent | sin | 14 | NA |
| 496 | 31.38 | temperature | 20 | 1440 | > th | dose independent | sin | 15 | NA |
| 497 | 31.38 | temperature | 20 | 1440 | < th | dose independent | sin | 15 | NA |
| 512 | 31.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 1 |
| 612 | 31.47 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 7 |
| 626 | 31.48 | temperature | 20 | 4320 | < th | dose independent | rect. | 19 | 3 |
| 627 | 31.48 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 7 |
| 655 | 31.49 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 676 | 31.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 737 | 31.52 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 23 |
| 753 | 31.54 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 4 |
| 782 | 31.55 | humidity | 90 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 873 | 31.60 | temperature | 20 | 4320 | < th | dose independent | rect. | 21 | 1 |