BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0814900 Os02g0814900|Os02g0814900
         (315 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55810.2  | chr5:22584229-22586239 REVERSE LENGTH=265          223   7e-59

>AT5G55810.2 | chr5:22584229-22586239 REVERSE LENGTH=265
          Length = 264

 Score =  223 bits (569), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 123/253 (48%), Positives = 153/253 (60%), Gaps = 32/253 (12%)

Query: 84  GREGGKRGVAVLVATGSFNPPTYMHLRMFELAKDELQQRGYSVLGGYMSPVNDAYKKKGL 143
           G     +   VLVATGSFNPPT+MHLRMFELA+DEL+ +G+ VLGGYMSPVNDAYKKK +
Sbjct: 13  GSNTEDKTCVVLVATGSFNPPTFMHLRMFELARDELRSKGFHVLGGYMSPVNDAYKKKIM 72

Query: 144 LSAAHRIRLCELACESSSFVMVDRWEAMQKGFQRTLTV----LSRIRNALSKDGLADGG- 198
             A +   +  L       V+    EA+  G  + L        + ++ L+       G 
Sbjct: 73  CRAFYLQNIFSLV---EQCVVYKNVEAVSTGISKQLPTNFDGFIKGQDFLNNKSTCTRGV 129

Query: 199 ------------------------SPNVMLLCGSDLLESFSTPGVWIPDQVRIICKDFGV 234
                                   S  VMLLCGSDLL SF TPGVWIP+Q+R ICKD+G+
Sbjct: 130 ACYVFIIRASHYANDKHKFILMLESLKVMLLCGSDLLLSFCTPGVWIPEQLRTICKDYGI 189

Query: 235 ICIRREGKDVEKIISSSEILNECRDNIISVDEIVPNQISSSRVRECIKKCLSIKYLVCDE 294
           +CIRREG+DVE +IS  EILNE   N+  VD  VPNQISSSR+R+CI + LS+KYL  D 
Sbjct: 190 VCIRREGQDVENMISGDEILNENCANVKIVDNTVPNQISSSRLRQCISRGLSVKYLTEDG 249

Query: 295 VIQYIGEHKLYKE 307
           VI YI +H+LY E
Sbjct: 250 VIDYIRQHQLYTE 262



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.321    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,618,934
Number of extensions: 260805
Number of successful extensions: 584
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 584
Number of HSP's successfully gapped: 2
Length of query: 315
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 217
Effective length of database: 8,419,801
Effective search space: 1827096817
Effective search space used: 1827096817
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)