Os02g0805200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Proliferating cell nuclear antigen (PCNA) (Cyclin).
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Os02g0805200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Proliferating cell nuclear antigen (PCNA) (Cyclin).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.39 | 0.32 | 10.3 | 0.527 | 0.962 | 1.69 | 0.329 | -0.319 | 0.155 | 19 | 20.9 | 1407 | -- | -- |
| 46.44 | 0.317 | 10.3 | 0.605 | 0.957 | 1.7 | 0.369 | -- | 0.173 | 18.8 | 20.9 | 1323 | -- | -- |
| 46.53 | 0.318 | 10.3 | 0.528 | 0.964 | 1.66 | -- | -0.34 | 0.153 | 18.9 | 20.9 | 1334 | -- | -- |
| 46.78 | 0.319 | 10.3 | 0.599 | 0.957 | 1.71 | -- | -- | 0.172 | 18.9 | 20.9 | 1323 | -- | -- |
| 87.49 | 0.436 | 10.3 | 0.403 | -- | 1.64 | -- | -0.444 | 0.0596 | -- | 21.34 | 2098 | -- | -- |
| 120.08 | 0.514 | 10.2 | 1.33 | 0.943 | -- | 0.462 | -- | 0.603 | 19.1 | -- | -- | -- | -- |
| 120.63 | 0.514 | 10.2 | 1.32 | 0.943 | -- | -- | -- | 0.603 | 19.2 | -- | -- | -- | -- |
| 87.83 | 0.436 | 10.2 | 0.503 | -- | 1.7 | -- | -- | 0.0921 | -- | 21.33 | 2086 | -- | -- |
| 50.36 | 0.331 | 10.3 | -- | 0.969 | 1.95 | -- | -- | 0.0643 | 18.8 | 20.6 | 2717 | -- | -- |
| 167.72 | 0.605 | 10.1 | 1.3 | -- | -- | -- | -- | 0.587 | -- | -- | -- | -- | -- |
| 166.26 | 0.603 | 10.2 | -- | 0.93 | -- | -- | -- | 0.457 | 19.3 | -- | -- | -- | -- |
| 93.15 | 0.45 | 10.3 | -- | -- | 1.91 | -- | -- | -0.00206 | -- | 21.23 | 2091 | -- | -- |
| 212.22 | 0.68 | 10.2 | -- | -- | -- | -- | -- | 0.443 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.57 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 9 |
| 21 | 45.32 | temperature | 25 | 1440 | < th | dose dependent | sin | 14 | NA |
| 70 | 46.03 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 2 |
| 157 | 47.15 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 178 | 47.29 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 23 |
| 188 | 47.34 | temperature | 25 | 1440 | < th | dose dependent | rect. | 1 | 23 |
| 191 | 47.37 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 204 | 47.42 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 23 |
| 309 | 47.90 | temperature | 20 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 324 | 47.96 | temperature | 10 | 1440 | > th | dose dependent | sin | 11 | NA |
| 335 | 48.02 | temperature | 20 | 4320 | > th | dose independent | rect. | 18 | 6 |
| 495 | 48.62 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 14 |
| 559 | 48.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 591 | 49.00 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 14 |
| 686 | 49.29 | temperature | 20 | 1440 | < th | dose independent | rect. | 12 | 18 |
| 817 | 49.68 | temperature | 20 | 1440 | > th | dose independent | sin | 13 | NA |
| 999 | 50.12 | temperature | 20 | 1440 | < th | dose independent | sin | 13 | NA |