BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0805200 Os02g0805200|AK071591
(263 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0805200 Proliferating cell nuclear antigen (PCNA) (Cyc... 540 e-154
AK063098 336 8e-93
>Os02g0805200 Proliferating cell nuclear antigen (PCNA) (Cyclin)
Length = 263
Score = 540 bits (1392), Expect = e-154, Method: Compositional matrix adjust.
Identities = 263/263 (100%), Positives = 263/263 (100%)
Query: 1 MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQAMDSSHVALVALLLRSEGFEHY 60
MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQAMDSSHVALVALLLRSEGFEHY
Sbjct: 1 MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQAMDSSHVALVALLLRSEGFEHY 60
Query: 61 RCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESPNQDKIADFEMKLMD 120
RCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESPNQDKIADFEMKLMD
Sbjct: 61 RCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESPNQDKIADFEMKLMD 120
Query: 121 IDSEHLGIPDSEYQAIVRMPSSEFSRICKDLSSIGDTVIISVTKEGVKFSTAGDIGTANI 180
IDSEHLGIPDSEYQAIVRMPSSEFSRICKDLSSIGDTVIISVTKEGVKFSTAGDIGTANI
Sbjct: 121 IDSEHLGIPDSEYQAIVRMPSSEFSRICKDLSSIGDTVIISVTKEGVKFSTAGDIGTANI 180
Query: 181 VCRQNKTVDKPEDATIIEMQEPVSLTFALRYMNSFTKASPLSEQVTISLSSELPVVVEYK 240
VCRQNKTVDKPEDATIIEMQEPVSLTFALRYMNSFTKASPLSEQVTISLSSELPVVVEYK
Sbjct: 181 VCRQNKTVDKPEDATIIEMQEPVSLTFALRYMNSFTKASPLSEQVTISLSSELPVVVEYK 240
Query: 241 IAEMGYIRFYLAPKIEEDEEMKS 263
IAEMGYIRFYLAPKIEEDEEMKS
Sbjct: 241 IAEMGYIRFYLAPKIEEDEEMKS 263
>AK063098
Length = 260
Score = 336 bits (862), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 151/259 (58%), Positives = 208/259 (80%)
Query: 1 MLELRLVQGSLLKKVLEAIRELVTDANFDCSGTGFSLQAMDSSHVALVALLLRSEGFEHY 60
M E RL+ GS+ KV+E +RELV +A ++CSG G +LQAMDSSHVALV+L++RSEGFE Y
Sbjct: 1 MFEARLLHGSIFAKVIEGLRELVNEATWECSGNGITLQAMDSSHVALVSLVMRSEGFESY 60
Query: 61 RCDRNLSMGMNLNNMAKMLRCAGNDDIITIKADDGSDTVTFMFESPNQDKIADFEMKLMD 120
RCDRN+S+G++L +M+K+L+ G DD +TI+ +D SD++ ES NQDK AD+E++LMD
Sbjct: 61 RCDRNMSLGISLVSMSKVLKTMGKDDSLTIRVNDDSDSIIIAMESQNQDKFADYELRLMD 120
Query: 121 IDSEHLGIPDSEYQAIVRMPSSEFSRICKDLSSIGDTVIISVTKEGVKFSTAGDIGTANI 180
+DSEHLGIPD++Y ++MPSSEFSRIC+D+S +GD+V++ TKEGVKFS GD+G +I
Sbjct: 121 LDSEHLGIPDTDYSCTIKMPSSEFSRICRDMSIMGDSVLVCTTKEGVKFSAKGDLGQGSI 180
Query: 181 VCRQNKTVDKPEDATIIEMQEPVSLTFALRYMNSFTKASPLSEQVTISLSSELPVVVEYK 240
Q ++K E+A IIEM+E V+LTFA+RY++ F KA+PLS QV +SLS + P++ E+K
Sbjct: 181 RLVQTTNIEKEEEAVIIEMKEAVALTFAVRYLSMFCKAAPLSPQVGLSLSEDTPLMCEFK 240
Query: 241 IAEMGYIRFYLAPKIEEDE 259
IAEMG++RFYLAPKIE+ E
Sbjct: 241 IAEMGHVRFYLAPKIEDAE 259
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,966,309
Number of extensions: 307059
Number of successful extensions: 713
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 713
Number of HSP's successfully gapped: 2
Length of query: 263
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 164
Effective length of database: 11,866,615
Effective search space: 1946124860
Effective search space used: 1946124860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 155 (64.3 bits)