Os02g0796700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : WD40-like domain containing protein.
FiT-DB / Search/ Help/ Sample detail
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Os02g0796700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : WD40-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 25.59 | 0.238 | 11.2 | 1.25 | 0.402 | -0.22 | -0.0918 | 2.42 | 0.288 | 2.87 | 24.16 | 1868 | -- | -- |
| 27.53 | 0.244 | 11.2 | 0.719 | 0.419 | -0.103 | -0.107 | -- | 0.17 | 3.05 | 21.65 | 29260 | -- | -- |
| 25.62 | 0.236 | 11.2 | 1.26 | 0.402 | -0.226 | -- | 2.46 | 0.289 | 2.86 | 24.27 | 1862 | -- | -- |
| 27.47 | 0.244 | 11.2 | 0.806 | 0.424 | -0.178 | -- | -- | 0.176 | 2.91 | 15.03 | 23696 | -- | -- |
| 32.41 | 0.267 | 11.2 | 0.852 | -- | -0.517 | -- | 1.17 | 0.218 | -- | 24.27 | 1862 | -- | -- |
| 27.81 | 0.247 | 11.2 | 0.623 | 0.418 | -- | -0.108 | -- | 0.12 | 3.09 | -- | -- | -- | -- |
| 27.84 | 0.247 | 11.2 | 0.625 | 0.418 | -- | -- | -- | 0.121 | 3.08 | -- | -- | -- | -- |
| 33.16 | 0.269 | 11.2 | 0.704 | -- | -0.43 | -- | -- | 0.175 | -- | 24.27 | 1862 | -- | -- |
| 31.66 | 0.262 | 11.3 | -- | 0.421 | 0.393 | -- | -- | -0.0782 | 3.2 | 16.3 | 47520 | -- | -- |
| 37.81 | 0.287 | 11.2 | 0.643 | -- | -- | -- | -- | 0.131 | -- | -- | -- | -- | -- |
| 38.13 | 0.289 | 11.3 | -- | 0.43 | -- | -- | -- | 0.051 | 3.09 | -- | -- | -- | -- |
| 41.32 | 0.299 | 11.3 | -- | -- | 0.415 | -- | -- | -0.0782 | -- | 17 | 47520 | -- | -- |
| 48.7 | 0.326 | 11.2 | -- | -- | -- | -- | -- | 0.0602 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 24.88 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 3 | 24.92 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 6 | 24.98 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 4 | 9 |
| 42 | 25.04 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 11 |
| 45 | 25.05 | atmosphere | 1005 | 14400 | > th | dose independent | sin | 3 | NA |
| 70 | 25.07 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 3 | 6 |
| 100 | 25.09 | atmosphere | 1005 | 14400 | < th | dose independent | sin | 3 | NA |
| 102 | 25.09 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 11 | 1 |
| 290 | 25.19 | temperature | 20 | 90 | > th | dose dependent | rect. | 17 | 15 |
| 319 | 25.21 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 7 | 2 |
| 410 | 25.24 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 16 | 22 |
| 413 | 25.24 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 22 |
| 426 | 25.25 | atmosphere | 1005 | 14400 | > th | dose independent | no | NA | NA |
| 428 | 25.25 | atmosphere | 1005 | 14400 | < th | dose independent | no | NA | NA |
| 446 | 25.25 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 16 | 20 |
| 464 | 25.25 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 23 |
| 468 | 25.25 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 10 | 23 |
| 494 | 25.26 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 8 | 23 |
| 500 | 25.26 | atmosphere | 1005 | 14400 | < th | dose independent | rect. | 7 | 23 |
| 636 | 25.32 | wind | 9 | 4320 | < th | dose independent | rect. | 18 | 5 |
| 712 | 25.36 | temperature | 25 | 1440 | > th | dose independent | rect. | 20 | 3 |
| 730 | 25.37 | wind | 9 | 4320 | < th | dose independent | rect. | 20 | 1 |
| 734 | 25.37 | wind | 9 | 4320 | < th | dose independent | rect. | 18 | 8 |
| 749 | 25.37 | atmosphere | 1000 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 754 | 25.38 | wind | 9 | 4320 | < th | dose independent | rect. | 18 | 10 |
| 763 | 25.38 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 765 | 25.38 | temperature | 25 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 791 | 25.40 | temperature | 25 | 90 | > th | dose independent | rect. | 17 | 15 |
| 821 | 25.41 | temperature | 25 | 720 | > th | dose dependent | rect. | 16 | 1 |
| 823 | 25.41 | atmosphere | 995 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 825 | 25.41 | atmosphere | 1015 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 842 | 25.42 | wind | 9 | 4320 | > th | dose independent | rect. | 18 | 10 |
| 869 | 25.43 | atmosphere | 1005 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 870 | 25.43 | temperature | 25 | 1440 | < th | dose independent | rect. | 20 | 2 |
| 930 | 25.43 | wind | 9 | 4320 | > th | dose dependent | rect. | 18 | 10 |
| 932 | 25.43 | temperature | 20 | 10 | > th | dose dependent | rect. | 18 | 15 |
| 945 | 25.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |