BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0796700 Os02g0796700|AK112107
         (527 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G29380.1  | chr4:14458822-14464692 FORWARD LENGTH=1495         507   e-144

>AT4G29380.1 | chr4:14458822-14464692 FORWARD LENGTH=1495
          Length = 1494

 Score =  507 bits (1305), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 249/432 (57%), Positives = 333/432 (77%), Gaps = 9/432 (2%)

Query: 104  ETSWKPRGVLVAHLQEHRLSVNDIAVSTDNTFFVTASDDSSVKIWDTRKLEKDIAFRSRL 163
            ++ WKPRGVLVAHLQEHR +VNDIA S+D++FFV+ASDDS+VK+WD+RKLEKDI+FRSRL
Sbjct: 1064 DSGWKPRGVLVAHLQEHRSAVNDIATSSDHSFFVSASDDSTVKVWDSRKLEKDISFRSRL 1123

Query: 164  TYSLGSSRALCTTMLHGTPQVIVGASDGTLHLFSVD-CARGVGSVIERYSGIVDVKRKDL 222
            TY L  SR +CTTML  + QV+VGASDG +H+FS+D  +RG+G+V+E+YSGIVD+K+KD+
Sbjct: 1124 TYHLEGSRGMCTTMLRNSTQVVVGASDGVIHMFSIDHISRGLGNVVEKYSGIVDIKKKDV 1183

Query: 223  KEGAILSVVNCSTESFS-PTILFSTEHCGIHKWDTRTNAESWSFRSSPEEGYVSALVVGQ 281
            KEGA++S++N + +S S P +++ST++CGIH WDTR++ ++W+ +++PEEGYVS+LV   
Sbjct: 1184 KEGALVSLLNYTADSLSGPMVMYSTQNCGIHLWDTRSDLDAWTLKANPEEGYVSSLVTSP 1243

Query: 282  CGNWFISGSSRGVLTLWDNRFLLPVNSWKYLPATPIEKLCL-FIPPPNSISSSGRPVVFV 340
            CGNWF+SGSSRGVLTLWD RF +PVNSW+Y    PIEK+CL F+PP  S+S++ +P+++V
Sbjct: 1244 CGNWFVSGSSRGVLTLWDLRFRVPVNSWQYPIICPIEKMCLCFLPPSVSVSTTMKPLIYV 1303

Query: 341  AAGCNEVTLWDAENGSRHQIFRTASTENEAVVP----KAPSIHPNTRDETRP-ANYNYRI 395
            AAGCNEV+LW+AE GS HQ+ R A+ ENE  V     K PS   N +   R   +  YRI
Sbjct: 1304 AAGCNEVSLWNAEGGSCHQVLRVANYENETDVSEFQWKLPSNKVNPKPNHRQNMSSKYRI 1363

Query: 396  EELCDPPPRLPGIRSXXXXXXXXXXXXXXXXKIRYWDQARPEQSFCIAGPSVKGAGNDET 455
            EEL +PPPRLPGIRS                KIR WD + PE+S+CI GPS+KG GND+ 
Sbjct: 1364 EELNEPPPRLPGIRSLLPLPGGDLLTGGTDLKIRRWDYSSPERSYCICGPSLKGVGNDDF 1423

Query: 456  YDIRSSSCVQVVQEICRQPTTASRLTHKTQLAMAAADSAGCHRDAILALASVNLSSHRLI 515
            Y++++++ VQ VQE  R+P  A++LT K  LA AA D+AGCHRD++ +LASV L+   LI
Sbjct: 1424 YELKTNTGVQFVQETKRRP-LATKLTAKAVLAAAATDTAGCHRDSVQSLASVKLNQRLLI 1482

Query: 516  SGSRDGAVKVWK 527
            S SRDGA+KVWK
Sbjct: 1483 SSSRDGAIKVWK 1494



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.131    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,254,585
Number of extensions: 455736
Number of successful extensions: 1590
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1594
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 424
Effective length of database: 8,282,721
Effective search space: 3511873704
Effective search space used: 3511873704
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)