BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0796700 Os02g0796700|AK112107
(527 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0796700 WD40-like domain containing protein 977 0.0
>Os02g0796700 WD40-like domain containing protein
Length = 527
Score = 977 bits (2525), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/515 (93%), Positives = 481/515 (93%)
Query: 13 VHGSSSFYDGVPKGIPLYSMQGTALHANLGSDRHGSLSSSVPGIRTRENHFSNMHRXXXX 72
VHGSSSFYDGVPKGIPLYSMQGTALHANLGSDRHGSLSSSVPGIRTRENHFSNMHR
Sbjct: 13 VHGSSSFYDGVPKGIPLYSMQGTALHANLGSDRHGSLSSSVPGIRTRENHFSNMHRDGSI 72
Query: 73 XXXXXXXXXXXXXXISNSDNSGSFTRPALSLETSWKPRGVLVAHLQEHRLSVNDIAVSTD 132
ISNSDNSGSFTRPALSLETSWKPRGVLVAHLQEHRLSVNDIAVSTD
Sbjct: 73 SDSMNSSSSIPGDIISNSDNSGSFTRPALSLETSWKPRGVLVAHLQEHRLSVNDIAVSTD 132
Query: 133 NTFFVTASDDSSVKIWDTRKLEKDIAFRSRLTYSLGSSRALCTTMLHGTPQVIVGASDGT 192
NTFFVTASDDSSVKIWDTRKLEKDIAFRSRLTYSLGSSRALCTTMLHGTPQVIVGASDGT
Sbjct: 133 NTFFVTASDDSSVKIWDTRKLEKDIAFRSRLTYSLGSSRALCTTMLHGTPQVIVGASDGT 192
Query: 193 LHLFSVDCARGVGSVIERYSGIVDVKRKDLKEGAILSVVNCSTESFSPTILFSTEHCGIH 252
LHLFSVDCARGVGSVIERYSGIVDVKRKDLKEGAILSVVNCSTESFSPTILFSTEHCGIH
Sbjct: 193 LHLFSVDCARGVGSVIERYSGIVDVKRKDLKEGAILSVVNCSTESFSPTILFSTEHCGIH 252
Query: 253 KWDTRTNAESWSFRSSPEEGYVSALVVGQCGNWFISGSSRGVLTLWDNRFLLPVNSWKYL 312
KWDTRTNAESWSFRSSPEEGYVSALVVGQCGNWFISGSSRGVLTLWDNRFLLPVNSWKYL
Sbjct: 253 KWDTRTNAESWSFRSSPEEGYVSALVVGQCGNWFISGSSRGVLTLWDNRFLLPVNSWKYL 312
Query: 313 PATPIEKLCLFIPPPNSISSSGRPVVFVAAGCNEVTLWDAENGSRHQIFRTASTENEAVV 372
PATPIEKLCLFIPPPNSISSSGRPVVFVAAGCNEVTLWDAENGSRHQIFRTASTENEAVV
Sbjct: 313 PATPIEKLCLFIPPPNSISSSGRPVVFVAAGCNEVTLWDAENGSRHQIFRTASTENEAVV 372
Query: 373 PKAPSIHPNTRDETRPANYNYRIEELCDPPPRLPGIRSXXXXXXXXXXXXXXXXKIRYWD 432
PKAPSIHPNTRDETRPANYNYRIEELCDPPPRLPGIRS KIRYWD
Sbjct: 373 PKAPSIHPNTRDETRPANYNYRIEELCDPPPRLPGIRSLLPLPGGDLLTGGTDLKIRYWD 432
Query: 433 QARPEQSFCIAGPSVKGAGNDETYDIRSSSCVQVVQEICRQPTTASRLTHKTQLAMAAAD 492
QARPEQSFCIAGPSVKGAGNDETYDIRSSSCVQVVQEICRQPTTASRLTHKTQLAMAAAD
Sbjct: 433 QARPEQSFCIAGPSVKGAGNDETYDIRSSSCVQVVQEICRQPTTASRLTHKTQLAMAAAD 492
Query: 493 SAGCHRDAILALASVNLSSHRLISGSRDGAVKVWK 527
SAGCHRDAILALASVNLSSHRLISGSRDGAVKVWK
Sbjct: 493 SAGCHRDAILALASVNLSSHRLISGSRDGAVKVWK 527
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.402
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 18,241,171
Number of extensions: 743663
Number of successful extensions: 2294
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2288
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 422
Effective length of database: 11,553,331
Effective search space: 4875505682
Effective search space used: 4875505682
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 158 (65.5 bits)