Os02g0793300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Nudix hydrolase 3 (EC 3.6.1.-) (AtNUDT3). Splice isoform 2.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0793300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Nudix hydrolase 3 (EC 3.6.1.-) (AtNUDT3). Splice isoform 2.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 46.23 | 0.319 | 9.35 | 0.16 | 0.415 | 0.258 | -0.307 | -2.9 | 0.239 | 22.3 | 0.3604 | 3670 | -- | -- |
| 52.18 | 0.339 | 9.38 | 0.248 | 0.422 | -0.311 | -0.361 | -- | 0.255 | 22.4 | 0.3604 | 3670 | -- | -- |
| 46.55 | 0.318 | 9.35 | 0.175 | 0.419 | 0.291 | -- | -3 | 0.241 | 22.1 | 0.4189 | 3583 | -- | -- |
| 50.39 | 0.331 | 9.38 | 0.205 | 0.428 | -0.555 | -- | -- | 0.287 | 22 | 0.5797 | 983 | -- | -- |
| 56.88 | 0.351 | 9.34 | 0.186 | -- | 0.352 | -- | -3.21 | 0.237 | -- | 0.4763 | 3530 | -- | -- |
| 52.29 | 0.339 | 9.38 | 0.253 | 0.423 | -- | -0.351 | -- | 0.254 | 22.5 | -- | -- | -- | -- |
| 52.78 | 0.34 | 9.38 | 0.268 | 0.426 | -- | -- | -- | 0.255 | 22.3 | -- | -- | -- | -- |
| 61.06 | 0.364 | 9.37 | 0.187 | -- | -0.63 | -- | -- | 0.277 | -- | 0.5261 | 882 | -- | -- |
| 51.08 | 0.333 | 9.38 | -- | 0.425 | -0.654 | -- | -- | 0.261 | 22.2 | 0.4903 | 1000 | -- | -- |
| 63.85 | 0.373 | 9.37 | 0.275 | -- | -- | -- | -- | 0.256 | -- | -- | -- | -- | -- |
| 54.67 | 0.346 | 9.39 | -- | 0.428 | -- | -- | -- | 0.225 | 22.3 | -- | -- | -- | -- |
| 61.92 | 0.367 | 9.37 | -- | -- | -0.694 | -- | -- | 0.261 | -- | 0.484 | 970 | -- | -- |
| 65.84 | 0.379 | 9.38 | -- | -- | -- | -- | -- | 0.226 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.75 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 9 | 8 |
| 7 | 43.23 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 10 | 43.50 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 11 | 43.50 | radiation | 1.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 16 | 43.59 | wind | 9.0 | 4320 | > th | dose dependent | rect. | 18 | 2 |
| 25 | 43.92 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 6 | 1 |
| 27 | 43.92 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 29 | 43.92 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 80 | 43.92 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 82 | 43.92 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 84 | 43.92 | radiation | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 139 | 44.03 | wind | 7.0 | 4320 | < th | dose independent | rect. | 17 | 2 |
| 144 | 44.16 | wind | 7.0 | 4320 | > th | dose independent | rect. | 17 | 2 |
| 152 | 44.26 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 24 | 8 |
| 170 | 44.43 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 183 | 44.57 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 270 | 45.51 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 19 | 1 |
| 296 | 45.62 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 11 | 15 |
| 300 | 45.63 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 10 | 17 |
| 302 | 45.64 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 10 | 16 |
| 306 | 45.66 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 2 |
| 311 | 45.66 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 11 | 14 |
| 312 | 45.66 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 9 | 19 |
| 315 | 45.68 | atmosphere | 995.0 | 43200 | > th | dose independent | sin | 18 | NA |
| 318 | 45.68 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 320 | 45.69 | atmosphere | 995.0 | 43200 | < th | dose independent | sin | 18 | NA |
| 323 | 45.69 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 9 | 19 |
| 326 | 45.70 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 8 | 21 |
| 327 | 45.70 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 12 | 2 |
| 338 | 45.73 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 3 |
| 340 | 45.75 | atmosphere | 995.0 | 43200 | > th | dose independent | no | NA | NA |
| 343 | 45.75 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 21 | 21 |
| 356 | 45.76 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 9 | 23 |
| 371 | 45.77 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 10 |
| 384 | 45.80 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 12 |
| 401 | 45.82 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 5 | 3 |
| 424 | 45.88 | atmosphere | 995.0 | 43200 | < th | dose independent | no | NA | NA |
| 430 | 45.88 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 434 | 45.88 | atmosphere | 995.0 | 43200 | < th | dose independent | rect. | 21 | 22 |
| 451 | 45.90 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 466 | 45.93 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 2 |
| 473 | 45.93 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 2 |
| 491 | 45.96 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 589 | 46.08 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 20 | 22 |
| 590 | 46.08 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 20 | 22 |
| 591 | 46.08 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 20 | 22 |
| 612 | 46.12 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 13 | 10 |
| 622 | 46.13 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 19 |
| 628 | 46.13 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 19 |
| 653 | 46.16 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 13 | 19 |
| 656 | 46.17 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 698 | 46.21 | wind | 9.0 | 4320 | < th | dose dependent | rect. | 17 | 6 |
| 705 | 46.23 | radiation | 1.0 | 1440 | < th | dose independent | sin | 19 | NA |
| 743 | 46.25 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 4 | 23 |
| 744 | 46.25 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 4 | 23 |
| 747 | 46.25 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 4 | 23 |
| 805 | 46.29 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 20 | 21 |
| 808 | 46.30 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 12 | 15 |
| 848 | 46.33 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 13 | 14 |
| 853 | 46.33 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 6 | 21 |
| 855 | 46.33 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 17 | 23 |
| 859 | 46.33 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 860 | 46.33 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 13 | 14 |
| 862 | 46.33 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 17 | 23 |
| 870 | 46.34 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 6 | 21 |
| 873 | 46.34 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 17 | 23 |
| 879 | 46.34 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 6 | 21 |
| 941 | 46.38 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 9 | 18 |
| 947 | 46.38 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 19 |