BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0793300 Os02g0793300|AK072317
         (776 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0793300  Similar to Nudix hydrolase 3 (EC 3.6.1.-) (AtN...  1610   0.0  

>Os02g0793300 Similar to Nudix hydrolase 3 (EC 3.6.1.-) (AtNUDT3). Splice isoform
           2
          Length = 776

 Score = 1610 bits (4170), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 776/776 (100%), Positives = 776/776 (100%)

Query: 1   MAAEPEERLDVLTAGGEKTGASKARSEVHRDGDYHRAVHVWIYSESTGELLLQRRADCKD 60
           MAAEPEERLDVLTAGGEKTGASKARSEVHRDGDYHRAVHVWIYSESTGELLLQRRADCKD
Sbjct: 1   MAAEPEERLDVLTAGGEKTGASKARSEVHRDGDYHRAVHVWIYSESTGELLLQRRADCKD 60

Query: 61  TWPGQWDISSAGHISAGDSSLSSAQRELDEELGIKLPSDAFELLFVFLQECVINNGTYTN 120
           TWPGQWDISSAGHISAGDSSLSSAQRELDEELGIKLPSDAFELLFVFLQECVINNGTYTN
Sbjct: 61  TWPGQWDISSAGHISAGDSSLSSAQRELDEELGIKLPSDAFELLFVFLQECVINNGTYTN 120

Query: 121 NEYNDVYLVTTLTPIPLEAFTLQESEVSAVRYMHLDEYKSCLAKESGEYVPYDVNGTYGQ 180
           NEYNDVYLVTTLTPIPLEAFTLQESEVSAVRYMHLDEYKSCLAKESGEYVPYDVNGTYGQ
Sbjct: 121 NEYNDVYLVTTLTPIPLEAFTLQESEVSAVRYMHLDEYKSCLAKESGEYVPYDVNGTYGQ 180

Query: 181 LFSIIEERYKDNIESRSLTLQKQINRYAPIHLEPELTSLSEGDREALGYILKASIVIDDI 240
           LFSIIEERYKDNIESRSLTLQKQINRYAPIHLEPELTSLSEGDREALGYILKASIVIDDI
Sbjct: 181 LFSIIEERYKDNIESRSLTLQKQINRYAPIHLEPELTSLSEGDREALGYILKASIVIDDI 240

Query: 241 FYEQVWNSNCTLRDWLKARANYSSFDKLKWLYYSINKSPWSCLDENKAFLSTADSAVKLL 300
           FYEQVWNSNCTLRDWLKARANYSSFDKLKWLYYSINKSPWSCLDENKAFLSTADSAVKLL
Sbjct: 241 FYEQVWNSNCTLRDWLKARANYSSFDKLKWLYYSINKSPWSCLDENKAFLSTADSAVKLL 300

Query: 301 TDATKSVSGWKGIEYRAAFPRDNPPGANFYPPDMDKMEFELWKNGLPEKEQKYATGFFTV 360
           TDATKSVSGWKGIEYRAAFPRDNPPGANFYPPDMDKMEFELWKNGLPEKEQKYATGFFTV
Sbjct: 301 TDATKSVSGWKGIEYRAAFPRDNPPGANFYPPDMDKMEFELWKNGLPEKEQKYATGFFTV 360

Query: 361 IKRHDALLPSILAQSDGSNQTKTSDDLFVVPYSEEYKSSLEKAAELLHKASECSDSPSLK 420
           IKRHDALLPSILAQSDGSNQTKTSDDLFVVPYSEEYKSSLEKAAELLHKASECSDSPSLK
Sbjct: 361 IKRHDALLPSILAQSDGSNQTKTSDDLFVVPYSEEYKSSLEKAAELLHKASECSDSPSLK 420

Query: 421 NLLKTKANAFLSNDYYESDIAWMELDSNLDVTIGPYETYEDGLFSYKATFEAFVGVRDDI 480
           NLLKTKANAFLSNDYYESDIAWMELDSNLDVTIGPYETYEDGLFSYKATFEAFVGVRDDI
Sbjct: 421 NLLKTKANAFLSNDYYESDIAWMELDSNLDVTIGPYETYEDGLFSYKATFEAFVGVRDDI 480

Query: 481 ATSQVKLFGDQLRDLEKHLPLDNIYKSDNVSAAPIRVINLLYNSGDVKGPQTIAFNLPND 540
           ATSQVKLFGDQLRDLEKHLPLDNIYKSDNVSAAPIRVINLLYNSGDVKGPQTIAFNLPND
Sbjct: 481 ATSQVKLFGDQLRDLEKHLPLDNIYKSDNVSAAPIRVINLLYNSGDVKGPQTIAFNLPND 540

Query: 541 ERIVNERGTSMVMLKNISEAKFKHILKPIANACIREEQEDYVDFEPYYTHIVCHECCHGI 600
           ERIVNERGTSMVMLKNISEAKFKHILKPIANACIREEQEDYVDFEPYYTHIVCHECCHGI
Sbjct: 541 ERIVNERGTSMVMLKNISEAKFKHILKPIANACIREEQEDYVDFEPYYTHIVCHECCHGI 600

Query: 601 GPHSITLPTGKRSTVRMELQEFHSALEEAKADIVGLWALNFLIKKGLLPKSLSESMYVSF 660
           GPHSITLPTGKRSTVRMELQEFHSALEEAKADIVGLWALNFLIKKGLLPKSLSESMYVSF
Sbjct: 601 GPHSITLPTGKRSTVRMELQEFHSALEEAKADIVGLWALNFLIKKGLLPKSLSESMYVSF 660

Query: 661 LAGCFRSIRFGLEEAHGKGQALQFNWLYEKGAFVLHSDGKFSVDFTKVEDAVESLSREIL 720
           LAGCFRSIRFGLEEAHGKGQALQFNWLYEKGAFVLHSDGKFSVDFTKVEDAVESLSREIL
Sbjct: 661 LAGCFRSIRFGLEEAHGKGQALQFNWLYEKGAFVLHSDGKFSVDFTKVEDAVESLSREIL 720

Query: 721 TIQAKGDKPAAQSLLQSHASLTQPLRVALDKIEHMQVPVDITPIFGTANKLLANDQ 776
           TIQAKGDKPAAQSLLQSHASLTQPLRVALDKIEHMQVPVDITPIFGTANKLLANDQ
Sbjct: 721 TIQAKGDKPAAQSLLQSHASLTQPLRVALDKIEHMQVPVDITPIFGTANKLLANDQ 776



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.316    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,095,978
Number of extensions: 1094738
Number of successful extensions: 2640
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2640
Number of HSP's successfully gapped: 1
Length of query: 776
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 667
Effective length of database: 11,344,475
Effective search space: 7566764825
Effective search space used: 7566764825
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 160 (66.2 bits)