Os02g0793000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, CCCH-type domain containing protein.
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Os02g0793000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, CCCH-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.85 | 0.199 | 10.1 | 0.9 | 0.737 | 1.48 | 1.63 | 1.11 | 0.34 | 6.98 | 0.2268 | 669 | -- | -- |
| 18.15 | 0.198 | 10.1 | 0.896 | 0.387 | 1.05 | 0.984 | -- | 0.345 | 7.6 | 0.17 | 623 | -- | -- |
| 20.82 | 0.214 | 10.1 | 1.02 | 0.652 | 0.082 | -- | 0.323 | 0.389 | 15.8 | 0.2292 | 640 | -- | -- |
| 20.04 | 0.208 | 10.1 | 0.936 | 0.405 | 1.05 | -- | -- | 0.353 | 8.11 | 0.23 | 639 | -- | -- |
| 21.65 | 0.217 | 10.1 | 1.05 | -- | 0.669 | -- | 0.255 | 0.374 | -- | 1.02 | 472 | -- | -- |
| 21.7 | 0.218 | 10.1 | 1.02 | 0.7 | -- | 0.0677 | -- | 0.387 | 15.4 | -- | -- | -- | -- |
| 21.71 | 0.218 | 10.1 | 1.02 | 0.701 | -- | -- | -- | 0.388 | 15.4 | -- | -- | -- | -- |
| 21.23 | 0.215 | 10.1 | 0.967 | -- | 0.674 | -- | -- | 0.342 | -- | 0.22 | 469 | -- | -- |
| 43.03 | 0.306 | 10.1 | -- | 0.458 | 1.12 | -- | -- | 0.319 | 7.66 | 0.001142 | 647 | -- | -- |
| 49.39 | 0.328 | 10.1 | 0.99 | -- | -- | -- | -- | 0.369 | -- | -- | -- | -- | -- |
| 49.14 | 0.328 | 10.1 | -- | 0.681 | -- | -- | -- | 0.274 | 15.4 | -- | -- | -- | -- |
| 44.31 | 0.31 | 10 | -- | -- | 1.13 | -- | -- | 0.317 | -- | 0.02995 | 1886 | -- | -- |
| 75.26 | 0.405 | 10.1 | -- | -- | -- | -- | -- | 0.259 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.41 | radiation | 1.0 | 720 | > th | dose independent | rect. | 13 | 4 |
| 2 | 17.42 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 9 | 19 |
| 4 | 17.43 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 17 |
| 6 | 17.45 | radiation | 1.0 | 720 | < th | dose independent | rect. | 10 | 18 |
| 11 | 17.47 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 17 | 11 |
| 24 | 17.54 | radiation | 1.0 | 720 | > th | dose independent | rect. | 11 | 6 |
| 33 | 17.69 | radiation | 30.0 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 62 | 17.86 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 8 | 12 |
| 68 | 17.87 | radiation | 1.0 | 720 | < th | dose independent | rect. | 9 | 12 |
| 76 | 17.88 | radiation | 1.0 | 720 | < th | dose independent | rect. | 11 | 10 |
| 83 | 17.89 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 11 | 9 |
| 139 | 18.06 | radiation | 1.0 | 720 | < th | dose independent | sin | 18 | NA |
| 147 | 18.10 | radiation | 1.0 | 720 | > th | dose independent | sin | 19 | NA |
| 154 | 18.13 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 8 |
| 166 | 18.15 | radiation | 1.0 | 720 | < th | dose dependent | sin | 19 | NA |
| 217 | 18.28 | radiation | 1.0 | 270 | > th | dose independent | rect. | 17 | 23 |
| 253 | 18.35 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 23 | 23 |
| 254 | 18.36 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 1 |
| 265 | 18.38 | radiation | 1.0 | 270 | < th | dose independent | rect. | 23 | 23 |
| 268 | 18.39 | radiation | 1.0 | 90 | > th | dose independent | sin | 1 | NA |
| 280 | 18.40 | radiation | 10.0 | 4320 | < th | dose dependent | rect. | 23 | 6 |
| 295 | 18.44 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 1 |
| 352 | 18.48 | wind | 7.0 | 270 | < th | dose independent | rect. | 5 | 11 |
| 359 | 18.49 | radiation | 20.0 | 270 | < th | dose independent | rect. | 15 | 14 |
| 374 | 18.51 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 16 | 15 |
| 382 | 18.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 1 |
| 384 | 18.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 406 | 18.54 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 16 | 14 |
| 422 | 18.56 | radiation | 1.0 | 720 | > th | dose independent | rect. | 9 | 22 |
| 478 | 18.63 | radiation | 1.0 | 4320 | < th | dose independent | rect. | 23 | 6 |
| 494 | 18.64 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 19 | 10 |
| 502 | 18.65 | radiation | 1.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 528 | 18.66 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 6 | 10 |
| 535 | 18.67 | radiation | 1.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 544 | 18.68 | radiation | 40.0 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 565 | 18.68 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 575 | 18.69 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 14 |
| 576 | 18.70 | radiation | 20.0 | 720 | < th | dose independent | rect. | 15 | 6 |
| 639 | 18.73 | radiation | 1.0 | 720 | < th | dose independent | rect. | 23 | 20 |
| 653 | 18.74 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 5 | 11 |
| 758 | 18.81 | humidity | 50.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 765 | 18.81 | temperature | 25.0 | 90 | < th | dose independent | rect. | 11 | 19 |
| 782 | 18.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 5 | 11 |
| 783 | 18.82 | wind | 9.0 | 270 | < th | dose independent | rect. | 16 | 13 |
| 784 | 18.82 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 13 |
| 789 | 18.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 5 | 11 |
| 791 | 18.83 | radiation | 1.0 | 10 | > th | dose independent | rect. | 6 | 10 |
| 800 | 18.83 | wind | 9.0 | 270 | < th | dose dependent | rect. | 5 | 11 |
| 804 | 18.83 | radiation | 1.0 | 720 | < th | dose dependent | rect. | 23 | 20 |
| 808 | 18.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 11 |
| 809 | 18.84 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 5 | 11 |
| 811 | 18.84 | temperature | 10.0 | 270 | > th | dose independent | rect. | 16 | 13 |
| 817 | 18.84 | temperature | 30.0 | 10 | < th | dose dependent | sin | 17 | NA |
| 847 | 18.85 | radiation | 1.0 | 720 | < th | dose dependent | no | NA | NA |
| 854 | 18.85 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 24 | 14 |
| 869 | 18.86 | radiation | 1.0 | 720 | > th | dose independent | no | NA | NA |
| 939 | 18.87 | radiation | 1.0 | 720 | < th | dose independent | no | NA | NA |
| 942 | 18.87 | humidity | 80.0 | 720 | < th | dose independent | rect. | 12 | 4 |
| 946 | 18.87 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 18 | 7 |
| 977 | 18.88 | wind | 5.0 | 270 | < th | dose independent | rect. | 13 | 11 |
| 979 | 18.88 | wind | 5.0 | 30 | < th | dose independent | rect. | 14 | 13 |
| 1000 | 18.89 | wind | 9.0 | 4320 | < th | dose independent | rect. | 4 | 3 |