BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0793000 Os02g0793000|AK105863
(504 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0793000 Zinc finger, CCCH-type domain containing protein 825 0.0
>Os02g0793000 Zinc finger, CCCH-type domain containing protein
Length = 504
Score = 825 bits (2131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 418/504 (82%), Positives = 418/504 (82%)
Query: 1 MAGEEGEDEAASIELQLEHHLQEQRASLTAVDEALAADPSNADLLEVHEELLAAIKDAEE 60
MAGEEGEDEAASIELQLEHHLQEQRASLTAVDEALAADPSNADLLEVHEELLAAIKDAEE
Sbjct: 1 MAGEEGEDEAASIELQLEHHLQEQRASLTAVDEALAADPSNADLLEVHEELLAAIKDAEE 60
Query: 61 GLLHLKRSRLVKQIDEIFPNQEPTSXXXXXXXXXXXXXXXXXXXXXXFSVGSKCRFRHKD 120
GLLHLKRSRLVKQIDEIFPNQEPTS FSVGSKCRFRHKD
Sbjct: 61 GLLHLKRSRLVKQIDEIFPNQEPTSEAPEVAVDPPDDVEPEPLEPQEFSVGSKCRFRHKD 120
Query: 121 GRWYNGCVIGLEGSSDARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLK 180
GRWYNGCVIGLEGSSDARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLK
Sbjct: 121 GRWYNGCVIGLEGSSDARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLK 180
Query: 181 QFTPTRWQQSLVGSSILAASGHHSGLWRRAELESWDDDLKVGQVVFQDDGSSARLPSDSL 240
QFTPTRWQQSLVGSSILAASGHHSGLWRRAELESWDDDLKVGQVVFQDDGSSARLPSDSL
Sbjct: 181 QFTPTRWQQSLVGSSILAASGHHSGLWRRAELESWDDDLKVGQVVFQDDGSSARLPSDSL 240
Query: 241 SIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHQGLGLLESKNLSGVQTETAIFAKW 300
SI VHQGLGLLESKNLSGVQTETAIFAKW
Sbjct: 241 SISEYADESDEDGEGSSSDEGSDFSEDGDQEDESVHQGLGLLESKNLSGVQTETAIFAKW 300
Query: 301 EHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHAVAASEVNDSVXX 360
EHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHAVAASEVNDSV
Sbjct: 301 EHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHAVAASEVNDSVGP 360
Query: 361 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVFSFINSQLVGQDVAEGSAVKSKKDSSGE 420
SVFSFINSQLVGQDVAEGSAVKSKKDSSGE
Sbjct: 361 GKKRSRGGKRKREKKFAEQARAAKAEEEERSVFSFINSQLVGQDVAEGSAVKSKKDSSGE 420
Query: 421 ANGHAKKEDRRSLLAYDDEVKELRSRVEKLEEMMKRNRKDKAFYEAASKKLKQTRKALAD 480
ANGHAKKEDRRSLLAYDDEVKELRSRVEKLEEMMKRNRKDKAFYEAASKKLKQTRKALAD
Sbjct: 421 ANGHAKKEDRRSLLAYDDEVKELRSRVEKLEEMMKRNRKDKAFYEAASKKLKQTRKALAD 480
Query: 481 AEATHASATNAVARKEKEKKWLKF 504
AEATHASATNAVARKEKEKKWLKF
Sbjct: 481 AEATHASATNAVARKEKEKKWLKF 504
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.314 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,989,130
Number of extensions: 505540
Number of successful extensions: 1635
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1632
Number of HSP's successfully gapped: 1
Length of query: 504
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 399
Effective length of database: 11,553,331
Effective search space: 4609779069
Effective search space used: 4609779069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 158 (65.5 bits)