BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0793000 Os02g0793000|AK105863
(504 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G24830.1 | chr2:10576993-10579154 REVERSE LENGTH=498 426 e-119
>AT2G24830.1 | chr2:10576993-10579154 REVERSE LENGTH=498
Length = 497
Score = 426 bits (1096), Expect = e-119, Method: Compositional matrix adjust.
Identities = 237/515 (46%), Positives = 308/515 (59%), Gaps = 29/515 (5%)
Query: 1 MAGEEGEDEAASIELQLEHHLQEQRASLTAVDEALAADPSNADLLEVHEELLAAIKDAEE 60
MA EE D +E L+ L EQ+ SL+++DEAL +DPSN +LL VHEELL+AIK+ EE
Sbjct: 1 MASEENND----LENLLDIQLIEQKESLSSIDEALLSDPSNPELLSVHEELLSAIKEVEE 56
Query: 61 GLLHLKRSRLVKQIDEIFPNQEPTSXXXXXXXXXXXXXXXXXXXXXXFSVGSKCRFRHKD 120
GLLHLKR+RL+++ D + + GSKCRFRH D
Sbjct: 57 GLLHLKRARLLEEADIVLNGLNHDAGVKPEHLEPEKTEEKKDLD------GSKCRFRHTD 110
Query: 121 GRWYNGCVIGLEGSSDARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLK 180
GRWYNG +IG EGS A+ISFLTPTSE+M +CKFF+QQRCRFGS+CR SHG+ +PI SLK
Sbjct: 111 GRWYNGRIIGFEGSDSAKISFLTPTSESMMICKFFMQQRCRFGSSCRSSHGLDVPISSLK 170
Query: 181 QFTPTRWQQSLVGSSILAASGHHSGLWRRAELESWDDDLKVGQVVFQDDGSSARLPSDSL 240
+ T W+Q +VGS I A SG +WR+AELESWDD+L+VG VVF+DD SSA+L SDSL
Sbjct: 171 NYEQTEWKQLMVGSKIWAVSGSKYDIWRKAELESWDDELQVGGVVFRDDKSSAKLGSDSL 230
Query: 241 SIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVH-----QGLGLLESKNLS-GVQTET 294
++ + QG+G LES NL GVQT+T
Sbjct: 231 ALSEYAQMTDDDGEEEEEEDEQQSASDSEDSVSSDYDEGSPQGIGFLESTNLPRGVQTDT 290
Query: 295 AIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHA---VAA 351
A+FAKWE+HTRG+ASKMMA MGYREGMGLGVSGQG+L+PI VKVLP K+SLD+A +
Sbjct: 291 ALFAKWENHTRGIASKMMASMGYREGMGLGVSGQGILNPILVKVLPAKRSLDYALEHIRN 350
Query: 352 SEVNDSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVFSFINSQLVG--QDVAEGS 409
E +FS IN Q+ +
Sbjct: 351 GECKSEKQKKKRSRGGKRKRGKKFAEAAKAAKQEEESKPDLFSLINEQIFPTRHEKVHSE 410
Query: 410 AVKSKKDSSGEANGHAKKEDRRSLLAYDDEVKELRSRVEKLEEMMKRNRKDKAFYEAASK 469
+VK++++ DR++L+ Y DEV++L+ + KLE+M+ RN+KD EAA++
Sbjct: 411 SVKNRQNKG--------PVDRKALVEYQDEVRDLKLEMLKLEQMVNRNKKDLVVSEAATR 462
Query: 470 KLKQTRKALADAEATHASATNAVARKEKEKKWLKF 504
+LK+ RKALA A A+A+NA+ KE EKKWLKF
Sbjct: 463 RLKEVRKALASTLACQAAASNAIVSKENEKKWLKF 497
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.129 0.365
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,852,269
Number of extensions: 319714
Number of successful extensions: 1389
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1391
Number of HSP's successfully gapped: 4
Length of query: 504
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 401
Effective length of database: 8,282,721
Effective search space: 3321371121
Effective search space used: 3321371121
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)