Os02g0791300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Helix-loop-helix DNA-binding domain containing protein.
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Os02g0791300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Helix-loop-helix DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.9 | 0.332 | 3 | -0.18 | 0.0515 | -0.331 | -0.55 | 1.55 | 0.0171 | 5.38 | 1.025 | 12 | -- | -- |
| 52 | 0.338 | 2.99 | -0.119 | 0.0706 | -0.193 | -0.727 | -- | 0.0315 | 4.95 | 1.025 | 12 | -- | -- |
| 50.07 | 0.332 | 3 | -0.201 | 0.0606 | -0.321 | -- | 1.71 | 0.0172 | 7.06 | 1.02 | 12 | -- | -- |
| 53.25 | 0.34 | 2.99 | -0.118 | 0.0722 | -0.218 | -- | -- | 0.0345 | 6.62 | 1.064 | 12 | -- | -- |
| 50.25 | 0.332 | 3 | -0.203 | -- | -0.341 | -- | 1.73 | 0.0182 | -- | 1.02 | 12 | -- | -- |
| 53.17 | 0.342 | 2.99 | -0.0966 | 0.129 | -- | -0.684 | -- | 0.0286 | 5.02 | -- | -- | -- | -- |
| 54.34 | 0.345 | 2.99 | -0.0951 | 0.126 | -- | -- | -- | 0.032 | 5.56 | -- | -- | -- | -- |
| 53.49 | 0.341 | 2.99 | -0.122 | -- | -0.25 | -- | -- | 0.0368 | -- | 1.08 | 12 | -- | -- |
| 53.61 | 0.341 | 2.98 | -- | 0.074 | -0.205 | -- | -- | 0.0477 | 6.6 | 1.1 | 11 | -- | -- |
| 55.17 | 0.347 | 2.99 | -0.091 | -- | -- | -- | -- | 0.0351 | -- | -- | -- | -- | -- |
| 54.58 | 0.346 | 2.98 | -- | 0.125 | -- | -- | -- | 0.0426 | 5.59 | -- | -- | -- | -- |
| 53.87 | 0.342 | 2.98 | -- | -- | -0.237 | -- | -- | 0.0494 | -- | 1.097 | 11 | -- | -- |
| 55.39 | 0.347 | 2.99 | -- | -- | -- | -- | -- | 0.0452 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 44.97 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 3 |
| 3 | 45.76 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 4 | 45.80 | radiation | 10.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 20 | 45.93 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 7 | 1 |
| 40 | 46.39 | wind | 1.0 | 10 | > th | dose independent | rect. | 8 | 23 |
| 41 | 46.45 | humidity | 90.0 | 30 | < th | dose dependent | rect. | 7 | 1 |
| 44 | 46.56 | humidity | 80.0 | 90 | < th | dose dependent | rect. | 24 | 7 |
| 60 | 46.62 | humidity | 70.0 | 90 | < th | dose independent | rect. | 19 | 13 |
| 64 | 46.63 | humidity | 70.0 | 90 | < th | dose dependent | rect. | 19 | 13 |
| 76 | 46.66 | humidity | 80.0 | 90 | < th | dose independent | rect. | 6 | 1 |
| 77 | 46.66 | humidity | 70.0 | 10 | < th | dose independent | rect. | 7 | 1 |
| 80 | 46.66 | radiation | 20.0 | 90 | > th | dose independent | rect. | 6 | 1 |
| 154 | 46.66 | humidity | 70.0 | 10 | < th | dose dependent | rect. | 7 | 1 |
| 233 | 46.67 | radiation | 30.0 | 10 | > th | dose dependent | rect. | 7 | 1 |
| 541 | 46.99 | wind | 1.0 | 10 | < th | dose dependent | rect. | 2 | 3 |
| 544 | 47.01 | wind | 1.0 | 30 | < th | dose independent | rect. | 4 | 1 |
| 559 | 47.02 | wind | 1.0 | 30 | < th | dose dependent | rect. | 4 | 1 |
| 581 | 47.07 | precipitation | 0.1 | 10 | > th | dose independent | rect. | 3 | 1 |
| 585 | 47.07 | precipitation | 0.1 | 10 | > th | dose dependent | rect. | 3 | 1 |
| 743 | 47.93 | wind | 1.0 | 10 | < th | dose independent | rect. | 13 | 15 |
| 772 | 48.14 | wind | 1.0 | 10 | < th | dose independent | rect. | 2 | 10 |
| 808 | 48.38 | atmosphere | 1005.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 810 | 48.40 | temperature | 25.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 823 | 48.42 | temperature | 10.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 826 | 48.42 | humidity | 50.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 829 | 48.42 | atmosphere | 995.0 | 30 | > th | dose independent | rect. | 2 | 1 |
| 830 | 48.42 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 832 | 48.42 | radiation | 1.0 | 30 | < th | dose independent | rect. | 2 | 1 |
| 837 | 48.42 | precipitation | 0.1 | 30 | < th | dose independent | rect. | 2 | 1 |
| 862 | 48.42 | temperature | 10.0 | 30 | > th | dose independent | rect. | 3 | 23 |
| 864 | 48.42 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 865 | 48.42 | temperature | 30.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 866 | 48.42 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 868 | 48.42 | radiation | 1.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 873 | 48.42 | precipitation | 0.1 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 903 | 48.43 | humidity | 50.0 | 30 | > th | dose dependent | rect. | 2 | 1 |
| 913 | 48.44 | atmosphere | 1015.0 | 30 | < th | dose dependent | rect. | 2 | 1 |
| 914 | 48.45 | wind | 9.0 | 30 | < th | dose independent | rect. | 3 | 23 |
| 944 | 48.51 | wind | 1.0 | 30 | > th | dose independent | rect. | 2 | 1 |