BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0791300 Os02g0791300|J100039D05
         (203 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0791300  Helix-loop-helix DNA-binding domain containing...   230   6e-61

>Os02g0791300 Helix-loop-helix DNA-binding domain containing protein
          Length = 203

 Score =  230 bits (586), Expect = 6e-61,   Method: Compositional matrix adjust.
 Identities = 128/203 (63%), Positives = 128/203 (63%)

Query: 1   MPSARVQAXXXXXXXXXXXXXXRFKRALLRNLILGLRKGGVASGEMGFHERKSXXXXXXX 60
           MPSARVQA              RFKRALLRNLILGLRKGGVASGEMGFHERKS       
Sbjct: 1   MPSARVQAGGGGNGGAGGGGSGRFKRALLRNLILGLRKGGVASGEMGFHERKSAIKRAAD 60

Query: 61  XXXXXXXXXXPCWSRSLAAELAQAPQQHRXXXXXXXRKMICXXXXXXXXXXXXXXXXXPX 120
                     PCWSRSLAAELAQAPQQHR       RKMIC                 P 
Sbjct: 61  AALAAARGAAPCWSRSLAAELAQAPQQHRSPPSPSPRKMICRKIVRRSLIRRRRRPIRPA 120

Query: 121 XXXXXXXXXXYXXXXXXXXXVARAMVRKRASVLKEIVPGGKALDMCALLGETLDYAVSLK 180
                     Y         VARAMVRKRASVLKEIVPGGKALDMCALLGETLDYAVSLK
Sbjct: 121 NNTTAATTKAYGGGGGGGGGVARAMVRKRASVLKEIVPGGKALDMCALLGETLDYAVSLK 180

Query: 181 AQVDVMQLLVRTLQEQKLKNSGN 203
           AQVDVMQLLVRTLQEQKLKNSGN
Sbjct: 181 AQVDVMQLLVRTLQEQKLKNSGN 203



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.133    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 3,360,857
Number of extensions: 73546
Number of successful extensions: 184
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 203
Length of database: 17,035,801
Length adjustment: 96
Effective length of query: 107
Effective length of database: 12,023,257
Effective search space: 1286488499
Effective search space used: 1286488499
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 153 (63.5 bits)