Os02g0784100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os02g0784100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 315.89 | 0.835 | 4.7 | -2.09 | 0.282 | -1.34 | -0.994 | 0.039 | 0.592 | 14.6 | 25.9 | 4007 | -- | -- |
| 315.89 | 0.828 | 4.7 | -2.1 | 0.282 | -1.34 | -0.999 | -- | 0.592 | 14.6 | 25.91 | 4006 | -- | -- |
| 319.27 | 0.832 | 4.7 | -2.05 | 0.286 | -1.35 | -- | 0.283 | 0.596 | 15.1 | 25.9 | 4006 | -- | -- |
| 319.33 | 0.832 | 4.71 | -2.13 | 0.286 | -1.34 | -- | -- | 0.582 | 15.1 | 25.94 | 4006 | -- | -- |
| 323.79 | 0.838 | 4.7 | -2.06 | -- | -1.39 | -- | 0.215 | 0.6 | -- | 25.9 | 3930 | -- | -- |
| 365.03 | 0.896 | 4.75 | -2.59 | 0.432 | -- | -0.866 | -- | 0.354 | 14.1 | -- | -- | -- | -- |
| 367.85 | 0.898 | 4.76 | -2.61 | 0.431 | -- | -- | -- | 0.349 | 14.2 | -- | -- | -- | -- |
| 323.85 | 0.838 | 4.7 | -2.12 | -- | -1.38 | -- | -- | 0.592 | -- | 25.93 | 3938 | -- | -- |
| 434.13 | 0.97 | 4.7 | -- | 0.281 | -1.49 | -- | -- | 0.754 | 14.9 | 25.2 | 5449 | -- | -- |
| 378.92 | 0.91 | 4.76 | -2.63 | -- | -- | -- | -- | 0.338 | -- | -- | -- | -- | -- |
| 547.71 | 1.09 | 4.69 | -- | 0.48 | -- | -- | -- | 0.64 | 14.3 | -- | -- | -- | -- |
| 326.22 | 0.841 | 4.51 | -- | -- | -2.28 | -- | -- | 1.37 | -- | 21.05 | 47124 | -- | -- |
| 561.43 | 1.11 | 4.7 | -- | -- | -- | -- | -- | 0.63 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 304.43 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 22 | 11 |
| 6 | 306.25 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 22 | 11 |
| 10 | 306.81 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 9 |
| 21 | 308.30 | temperature | 25.0 | 1440 | > th | dose independent | rect. | 1 | 7 |
| 37 | 309.60 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 39 | 309.67 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 23 | 1 |
| 93 | 311.74 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 23 | 1 |
| 97 | 311.83 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 18 | 8 |
| 164 | 312.56 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 166 | 312.56 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 167 | 312.58 | temperature | 25.0 | 4320 | < th | dose independent | sin | 9 | NA |
| 169 | 312.59 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 18 | 2 |
| 179 | 312.67 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 14 | 1 |
| 186 | 312.70 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 18 | 2 |
| 195 | 312.75 | temperature | 25.0 | 43200 | < th | dose independent | sin | 12 | NA |
| 196 | 312.75 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 198 | 312.76 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 7 |
| 204 | 312.79 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 22 | 4 |
| 233 | 312.91 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 7 |
| 241 | 312.95 | temperature | 25.0 | 43200 | > th | dose independent | sin | 12 | NA |
| 253 | 313.00 | temperature | 25.0 | 4320 | > th | dose independent | sin | 9 | NA |
| 478 | 313.59 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 479 | 313.59 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 20 | 13 |
| 490 | 313.61 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 529 | 313.67 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 6 | 23 |
| 531 | 313.68 | temperature | 25.0 | 43200 | < th | dose independent | no | NA | NA |
| 534 | 313.68 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 536 | 313.68 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 6 | 21 |
| 539 | 313.68 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 4 | 23 |
| 551 | 313.70 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 15 |
| 557 | 313.70 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 21 |
| 576 | 313.72 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 6 | 20 |
| 602 | 313.74 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 634 | 313.77 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 14 |
| 643 | 313.78 | temperature | 25.0 | 43200 | > th | dose independent | no | NA | NA |
| 727 | 313.84 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 22 | 23 |
| 784 | 313.92 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 798 | 313.94 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 882 | 314.07 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 24 | 1 |
| 887 | 314.08 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 2 | 7 |
| 894 | 314.09 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 24 | 9 |
| 912 | 314.11 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 14 | 1 |
| 943 | 314.14 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 965 | 314.16 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 23 | 4 |
| 991 | 314.19 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 21 | 5 |