BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0784100 Os02g0784100|Os02g0784100
(1303 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G18730.1 | chr3:6446062-6453045 REVERSE LENGTH=1312 946 0.0
AT5G63200.1 | chr5:25349043-25352899 FORWARD LENGTH=650 52 2e-06
>AT3G18730.1 | chr3:6446062-6453045 REVERSE LENGTH=1312
Length = 1311
Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 578/1383 (41%), Positives = 796/1383 (57%), Gaps = 204/1383 (14%)
Query: 31 GNREEEARWANVIGDIHKRRGEYVEALRWLRIDYEVSVKYLPQRHLLPSCQSLGEVHLRL 90
G+R E+ARWAN +GDI K GEYV+AL+W RIDY++SVKYLP + LLP+CQSLGE++LRL
Sbjct: 20 GDRREQARWANNVGDILKNHGEYVDALKWFRIDYDISVKYLPGKDLLPTCQSLGEIYLRL 79
Query: 91 GNSSEALTYQKKHLQLAKEADDLVEQQRGSTQLGRTYYEILLRSENDHSAIRNAKKYFKS 150
N EAL YQKKHLQLA+EA+D VE+QR TQLGRTY+E+ L+SE+D AI++AKKYFK
Sbjct: 80 ENFEEALIYQKKHLQLAEEANDTVEKQRACTQLGRTYHEMFLKSEDDCEAIQSAKKYFKK 139
Query: 151 SMKLARVLKENPS-SQKSLFLKELIDAYNNMGMLELELDNYEEAEKLLVQGLKICDEEEV 209
+M+LA++LKE P + S FL+E I+A+NN+GML+L+LDN E A +L +GL+ICDEEEV
Sbjct: 140 AMELAQILKEKPPPGESSGFLEEYINAHNNIGMLDLDLDNPEAARTILKKGLQICDEEEV 199
Query: 210 HQYDDARSRLHHNLGNVYIELRNWNRAKGHIEKDIEICRKIRHTQGEAKGFINLGEVHSR 269
+YD ARSRLHHNLGNV++ LR+W+ AK HIE DI IC KI H QGEAKG+INL E+H++
Sbjct: 200 REYDAARSRLHHNLGNVFMALRSWDEAKKHIEMDINICHKINHVQGEAKGYINLAELHNK 259
Query: 270 VQKYEDAKLCYNKALQITKCLEDEDALMDQIHQNIETVTKAAKVLEEMKIYEQKLKKLAR 329
QKY DA LCY KA + K ++DE AL++QI N + V K+ KV+EE++ E LKKL+
Sbjct: 260 TQKYIDALLCYGKASSLAKSMQDESALVEQIEHNTKIVKKSMKVMEELREEELMLKKLSA 319
Query: 330 DTSNARGTSKERKLLLEQYAWLANLMEKARMITAWPKLKEFSKGQKRVANELHDKEKQSD 389
+ ++A+GTS+ERK +L+ A L +L++K+ M+ AW K ++SK +K++++EL DKEK SD
Sbjct: 320 EMTDAKGTSEERKSMLQVNACLGSLIDKSSMVFAWLKHLQYSKRKKKISDELCDKEKLSD 379
Query: 390 SLLVIGESYQKLRNFSKARKWCMKSWNMYRSIGNLEGQALAKVNIGNVLDSCGDWAGGL- 448
+ +++GESYQ LRNF K+ KW ++S+ + +IGNLEGQALAK+NIGN LD G+W G L
Sbjct: 380 AFMIVGESYQNLRNFRKSLKWFIRSYEGHEAIGNLEGQALAKINIGNGLDCIGEWTGALQ 439
Query: 449 --------------SNVQLDALENMHYSHMVRFDNIEEAKKLQQEIDNLKRMSDQHEARD 494
++QL ALE++HY HM+RF N ++A +L++ I NLK +A
Sbjct: 440 AYEEGYRIALKANLPSIQLSALEDIHYIHMMRFGNAQKASELKETIQNLKESEHAEKAEC 499
Query: 495 TVSDYCSETESED-GNVSDNILNTEDNDGNIANNSSE------EFDDDVVLASLVHKSRS 547
+ D CSET+SE NVS++ N + + SE E +DDV L S + +
Sbjct: 500 STQDECSETDSEGHANVSNDRPNACSSPQTPNSLRSERLADLDEANDDVPLISFLQPGK- 558
Query: 548 SKTKASKMHSSTKNVDGSCGMDESPEEDVSKSFSNHYGRKRVRVVISDDEAEEAPEI--- 604
+ K + D + V+ S GRKR+RV++SDDE+E E+
Sbjct: 559 ---RLFKRKQVSGKQDADTDQTKKDFSVVADSQQTVAGRKRIRVILSDDESETEYELGCP 615
Query: 605 -DQSKRTLTGRADSLSTSERIANTANRNRNQHTSHPIETREVDSVCTPCPAEESICSFKS 663
D S + L + S N N+ +E E CS+
Sbjct: 616 KDSSHKVLRQNEEVSEESMYFDGAINYTDNRAIQDNVE--------------EGSCSYTP 661
Query: 664 GSPVCHGNDGPDLGASSIGKLSVSKPAASGSKVGTLASN--SRPQGQNAVGLQSSDADHK 721
P+ K A + S +L++N G+ G Q D
Sbjct: 662 LHPI--------------------KVAPNVSNCRSLSNNIAVETTGRRKKGSQCDVGDSN 701
Query: 722 FWVFKIGEHLVYLDANACTREGAFSIE----------------SLKVEVACVYYLQIPDD 765
K G LV A + T + IE S+KVE+ C+YYLQ+PDD
Sbjct: 702 GTSCKTGAALVNFHAYSKTEDRKIKIEIENEHIALDSCSHDDESVKVELTCLYYLQLPDD 761
Query: 766 KRSKGLLPIIGELKCCGKVLDDTDSRDYIDQLASEQKSIDVVIDVIPHLIYHVYNEDWVP 825
++SKGLLPII L+ G+VL + + +SE I+ +D WV
Sbjct: 762 EKSKGLLPIIHHLEYGGRVLKPLELYAILRD-SSENVVIEASVD------------GWVH 808
Query: 826 KRLMKLYVDFCTKLSEAPXXXXXXXXXXXEVSEDEVIVSDCGLQDLSITPFLDALKLHKT 885
KRLMKLY+D C LSE P EV ED++ VS+C LQD+S P L AL +H
Sbjct: 809 KRLMKLYMDCCQSLSEKPSMKLLKKLYISEV-EDDINVSECELQDISAAPLLCALHVH-N 866
Query: 886 IAVLDLSHNMLGNQTIERLQQIFSSSSQTYGGLTLDLHCNRFGPTALFQVFLLSLNLFIK 945
IA+LDLSHNMLGN T+E+L+Q+F+SSSQ YG LTLDLHCNRFGPTALFQ
Sbjct: 867 IAMLDLSHNMLGNGTMEKLKQLFASSSQMYGALTLDLHCNRFGPTALFQ----------- 915
Query: 946 VKLQICECAVMTNRLEVLNLSGNRLTDACGSYLFTVLQKCKECVFCLHIVTALYSLNVEQ 1005
ICEC V+ RLEVLN+S NRLTDACGSYL T+++ C+ ALYSLNVE
Sbjct: 916 ----ICECPVLFTRLEVLNVSRNRLTDACGSYLSTIVKNCR----------ALYSLNVEH 961
Query: 1006 CSITSRTVQKMADALHEGSVLSHLSLGNNNPISGNTMXXXXXXXXXXXRFSELSLTGIKL 1065
CS+TSRT+QK+A+AL S LS L +G NNP+SG+++ F+ELS+ GIKL
Sbjct: 962 CSLTSRTIQKVANALDSKSGLSQLCIGYNNPVSGSSIQNLLAKLATLSSFAELSMNGIKL 1021
Query: 1066 NKLMADKLCLLAQSSCLSGFLLG----GT------------------------------- 1090
+ + D L L ++ LS L+G GT
Sbjct: 1022 SSQVVDSLYALVKTPSLSKLLVGSSGIGTDGAIKVTESLCYQKEETVKLDLSCCGLASSF 1081
Query: 1091 -----------------NIGS------GCEAIGVLLSNPQCSLRSLTLDRCNLGLAGIVG 1127
N+G G A+G LL NP +++ L L +C+L LAG++
Sbjct: 1082 FIKLNQDVTLTSSILEFNVGGNPITEEGISALGELLRNPCSNIKVLILSKCHLKLAGLLC 1141
Query: 1128 IIQALAGNDRLEELRIAENTNL---------ALQRTLQYDEDAQDVSPGTDQNQRTN-AE 1177
IIQAL+ N LEEL +++N + +R++ +++ T ++ E
Sbjct: 1142 IIQALSDNKNLEELNLSDNAKIEDETVFGQPVKERSVMVEQEHGTCKSVTSMDKEQELCE 1201
Query: 1178 ANDRIDPDKMEVPDSEDEEAVYEDTRAATGSDGXXXXXXXXXXXXXXHAIQELADAIISA 1237
N ++ D +EV DSEDE+ E+ A + S H ++EL+ A+ A
Sbjct: 1202 TN--MECDDLEVADSEDEQ--IEEGTATSSS---------LSLPRKNHIVKELSTALSMA 1248
Query: 1238 KQLKVLDLSRNGLSEEDIQSLYSAWASGPRGDGMARRHVAKEVVHFAVDGMNCCGLKPCC 1297
QLK+LDLS NG S E +++LY +W+S G+A+RHV +E VHF V+G CCG+K CC
Sbjct: 1249 NQLKILDLSNNGFSVEALETLYMSWSSSSSRTGIAQRHVKEETVHFYVEGKMCCGVKSCC 1308
Query: 1298 RRD 1300
R+D
Sbjct: 1309 RKD 1311
>AT5G63200.1 | chr5:25349043-25352899 FORWARD LENGTH=650
Length = 649
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 22/139 (15%)
Query: 176 AYNNMGMLELEL-DNYEEAEKLLVQGLKICDEEEVHQYDDARSRLHHNLGNVYIELRNWN 234
A++N+G + L+L D + EAE++ + L + E++ H + NLGN+Y + + +
Sbjct: 519 AWSNLG-ISLQLSDEHSEAEEVYKRALTVSKEDQAHA-------ILSNLGNLYRQKKQYE 570
Query: 235 RAKGHIEKDIEICRKIRHTQGEAKGFINLGEVHSRVQKYEDAKLCYNKALQITKCLEDED 294
+K K +E+ G A + NLG V +++E+AK C+ K+L+ D
Sbjct: 571 VSKAMFSKALEL------KPGYAPAYNNLGLVFVAERRWEEAKSCFEKSLEA-------D 617
Query: 295 ALMDQIHQNIETVTKAAKV 313
+L+D N+ T +++
Sbjct: 618 SLLDAAQSNLLKATTMSRL 636
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.131 0.378
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 26,822,258
Number of extensions: 1144740
Number of successful extensions: 4808
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 4786
Number of HSP's successfully gapped: 3
Length of query: 1303
Length of database: 11,106,569
Length adjustment: 110
Effective length of query: 1193
Effective length of database: 8,090,809
Effective search space: 9652335137
Effective search space used: 9652335137
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 118 (50.1 bits)