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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0782800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0233) R2 : 0.141
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.424 (0.0491) R2dN8 : 0.182 R2N8 : 0.141
σ : 0.439
deviance : 88.43
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
86.14 0.432 2.99 -0.124 0.0492 -0.112 -0.168 2.32 0.413 5.96 46.34 7 -- --
86.14 0.436 3 -0.139 0.0492 0.782 -0.167 -- 0.413 5.97 46.34 7 -- --
86.21 0.432 2.99 -0.126 0.0485 -0.0783 -- 2.23 0.414 6.43 46.69 6 -- --
86.21 0.435 3 -0.14 0.0486 0.781 -- -- 0.414 6.43 46.69 6 -- --
86.33 0.433 2.99 -0.124 -- -0.102 -- 2.3 0.415 -- 46.28 6 -- --
87.93 0.44 3 -0.108 0.0435 -- -0.199 -- 0.41 5.46 -- -- -- --
87.97 0.439 3 -0.108 0.0526 -- -- -- 0.411 7.78 -- -- -- --
86.33 0.435 3 -0.139 -- 0.782 -- -- 0.415 -- 42.54 3 -- --
86.72 0.436 2.99 -- 0.0469 0.728 -- -- 0.429 6.69 46.15 7 -- --
88.12 0.439 3 -0.107 -- -- -- -- 0.412 -- -- -- -- --
88.28 0.44 3 -- 0.0518 -- -- -- 0.423 7.93 -- -- -- --
86.83 0.435 3 -- -- 0.731 -- -- 0.43 -- 42.54 3 -- --
88.43 0.439 3 -- -- -- -- -- 0.424 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 83.92 humidity 80.0 30 < th dose independent rect. 1 5
5 83.92 humidity 80.0 30 < th dose dependent rect. 1 5
9 84.09 humidity 80.0 270 < th dose independent rect. 1 1
11 84.09 humidity 80.0 270 < th dose dependent rect. 1 1
19 85.34 humidity 80.0 30 < th dose independent rect. 1 3
23 85.35 humidity 80.0 30 < th dose dependent rect. 1 3
27 85.36 humidity 80.0 30 < th dose independent rect. 1 1
33 85.36 humidity 80.0 30 < th dose dependent rect. 1 1
36 85.37 wind 1.0 30 < th dose independent rect. 10 1
37 85.37 temperature 10.0 1440 > th dose independent rect. 11 1
41 85.37 atmosphere 995.0 1440 > th dose independent rect. 11 1
44 85.37 precipitation 0.1 1440 < th dose independent rect. 11 1
45 85.37 temperature 10.0 1440 > th dose independent rect. 12 23
48 85.37 wind 1.0 30 < th dose dependent rect. 10 1
49 85.37 precipitation 0.1 1440 < th dose dependent rect. 11 1
53 85.40 humidity 60.0 720 < th dose independent rect. 18 16
54 85.41 humidity 70.0 30 < th dose independent rect. 10 1
57 85.48 humidity 90.0 10 < th dose dependent rect. 22 8
58 85.48 humidity 60.0 720 < th dose dependent rect. 18 15
60 85.52 atmosphere 1005.0 30 > th dose independent rect. 10 1
61 85.55 humidity 60.0 720 < th dose dependent rect. 17 18
62 85.56 temperature 25.0 30 > th dose independent rect. 10 1
64 85.56 humidity 70.0 30 < th dose dependent rect. 10 1
67 85.59 radiation 40.0 30 < th dose independent rect. 10 1
68 85.59 humidity 50.0 720 < th dose independent rect. 17 19
69 85.59 temperature 25.0 30 > th dose dependent rect. 10 1
71 85.60 temperature 30.0 30 < th dose independent rect. 10 1
72 85.60 atmosphere 1005.0 30 > th dose dependent rect. 10 1
80 85.62 atmosphere 1010.0 30 < th dose independent rect. 10 1
82 85.63 radiation 20.0 30 > th dose independent rect. 10 1
83 85.64 atmosphere 1005.0 10 > th dose dependent rect. 4 8
85 85.65 atmosphere 1005.0 30 > th dose dependent rect. 8 4
103 85.72 humidity 60.0 30 > th dose independent rect. 10 1
105 85.72 humidity 80.0 270 < th dose independent rect. 23 7
106 85.72 humidity 50.0 720 > th dose independent rect. 19 16
117 85.74 humidity 80.0 270 < th dose dependent rect. 23 7
119 85.75 wind 5.0 30 < th dose independent rect. 10 1
121 85.75 humidity 80.0 10 < th dose independent rect. 3 3
128 85.75 humidity 80.0 270 < th dose independent rect. 23 4
146 85.76 temperature 10.0 30 > th dose independent rect. 10 1
149 85.76 humidity 90.0 30 < th dose independent rect. 10 1
150 85.76 atmosphere 995.0 30 > th dose independent rect. 10 1
154 85.76 precipitation 0.1 30 < th dose independent rect. 10 1
162 85.76 temperature 10.0 30 > th dose independent rect. 11 23
163 85.76 humidity 80.0 720 < th dose dependent rect. 20 1
164 85.76 precipitation 0.1 30 < th dose dependent rect. 10 1
167 85.76 humidity 80.0 270 < th dose dependent rect. 23 4
173 85.77 wind 1.0 30 > th dose independent rect. 10 1
182 85.77 humidity 50.0 270 < th dose dependent sin 8 NA
193 85.78 radiation 40.0 30 < th dose dependent rect. 10 1
206 85.83 humidity 80.0 720 > th dose independent rect. 20 1
211 85.84 radiation 1.0 30 > th dose dependent rect. 10 1
212 85.84 temperature 25.0 10 > th dose dependent rect. 18 17
214 85.85 humidity 80.0 1440 > th dose independent rect. 1 1
216 85.85 humidity 60.0 270 < th dose dependent sin 10 NA
229 85.87 humidity 80.0 10 > th dose independent rect. 20 14
230 85.87 atmosphere 1005.0 10 > th dose dependent rect. 1 11
231 85.88 humidity 50.0 270 < th dose independent sin 8 NA
255 85.94 humidity 80.0 10 > th dose independent sin 10 NA
264 85.96 atmosphere 1010.0 270 < th dose independent rect. 9 5
267 85.96 humidity 80.0 720 < th dose dependent rect. 20 7
272 85.96 atmosphere 1005.0 10 > th dose dependent rect. 4 15
273 85.97 humidity 50.0 270 > th dose independent sin 9 NA
274 85.97 temperature 25.0 14400 > th dose dependent rect. 23 1
284 85.99 humidity 50.0 30 > th dose dependent rect. 10 1
289 86.01 humidity 80.0 10 > th dose independent rect. 20 12
298 86.03 temperature 15.0 1440 > th dose independent rect. 9 1
306 86.04 atmosphere 1015.0 30 < th dose dependent rect. 10 1
311 86.05 humidity 50.0 270 < th dose independent sin 10 NA
316 86.06 atmosphere 1010.0 270 < th dose independent rect. 23 15
330 86.07 atmosphere 1005.0 10 > th dose dependent rect. 1 18
338 86.09 humidity 60.0 270 < th dose independent rect. 8 1
367 86.09 wind 1.0 4320 < th dose dependent rect. 12 1
368 86.09 humidity 70.0 270 < th dose dependent rect. 7 1
413 86.09 atmosphere 1005.0 10 > th dose dependent rect. 8 11
424 86.10 temperature 30.0 14400 > th dose independent rect. 17 1
426 86.10 atmosphere 1010.0 10 < th dose independent rect. 11 7
429 86.10 wind 1.0 30 > th dose dependent rect. 10 1
515 86.11 temperature 30.0 14400 < th dose independent rect. 17 1
519 86.11 radiation 1.0 90 > th dose independent rect. 4 1
534 86.11 humidity 80.0 270 < th dose independent rect. 1 5
543 86.11 atmosphere 1010.0 90 < th dose independent rect. 11 6
549 86.11 temperature 30.0 14400 < th dose independent rect. 17 8
584 86.11 radiation 1.0 90 > th dose dependent rect. 4 1
687 86.12 wind 9.0 30 < th dose independent rect. 11 23
728 86.13 humidity 50.0 10 < th dose independent rect. 12 2
844 86.13 humidity 50.0 30 > th dose independent rect. 13 23
846 86.13 temperature 30.0 14400 > th dose dependent rect. 17 1
855 86.13 humidity 50.0 10 < th dose dependent rect. 12 2