BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0782800 Os02g0782800|AK064434
         (441 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18730.1  | chr3:6446062-6453045 REVERSE LENGTH=1312           365   e-101

>AT3G18730.1 | chr3:6446062-6453045 REVERSE LENGTH=1312
          Length = 1311

 Score =  365 bits (938), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 207/453 (45%), Positives = 290/453 (64%), Gaps = 32/453 (7%)

Query: 1    MLGNQTIERLQQIFSSSSQTYGGLTLDLHCNRFGPTALFQICECAVMTNRLEVLNLSGNR 60
            MLGN T+E+L+Q+F+SSSQ YG LTLDLHCNRFGPTALFQICEC V+  RLEVLN+S NR
Sbjct: 876  MLGNGTMEKLKQLFASSSQMYGALTLDLHCNRFGPTALFQICECPVLFTRLEVLNVSRNR 935

Query: 61   LTDACGSYLFTILQKCKALYSLNVEQCSITSRTVQKMADALHEGSALSHLSLGNNNPISG 120
            LTDACGSYL TI++ C+ALYSLNVE CS+TSRT+QK+A+AL   S LS L +G NNP+SG
Sbjct: 936  LTDACGSYLSTIVKNCRALYSLNVEHCSLTSRTIQKVANALDSKSGLSQLCIGYNNPVSG 995

Query: 121  NTMXXXXXXXXXXXRFSELSLTGIKLSKLMVDKLCVLAQSSCLSGFLLGGTYIGSGGATK 180
            +++            F+ELS+ GIKLS  +VD L  L ++  LS  L+G + IG+ GA K
Sbjct: 996  SSIQNLLAKLATLSSFAELSMNGIKLSSQVVDSLYALVKTPSLSKLLVGSSGIGTDGAIK 1055

Query: 181  LTEALSCASQELLRLDLSNCGLTTPDFSQLCTNLSQI-NIVDLNLGGNSFTLEECDAIRA 239
            +TE+L    +E ++LDLS CGL +  F +L  +++   +I++ N+GGN  T E   A+  
Sbjct: 1056 VTESLCYQKEETVKLDLSCCGLASSFFIKLNQDVTLTSSILEFNVGGNPITEEGISALGE 1115

Query: 240  LLSNPQCSLRSLTLDRCNLGLAGTVGIIQALAGNDQLEELRVAENTNL---------ALQ 290
            LL NP  +++ L L +C+L LAG + IIQAL+ N  LEEL +++N  +           +
Sbjct: 1116 LLRNPCSNIKVLILSKCHLKLAGLLCIIQALSDNKNLEELNLSDNAKIEDETVFGQPVKE 1175

Query: 291  RTLQYDEDAQDVSPGT--DQNQ---RTNAEANDHIDPDKMEVPDSEDEEAVHEDTRAATG 345
            R++  +++       T  D+ Q    TN E +D      +EV DSEDE+ + E T  ++ 
Sbjct: 1176 RSVMVEQEHGTCKSVTSMDKEQELCETNMECDD------LEVADSEDEQ-IEEGTATSSS 1228

Query: 346  PDGXXXXXXXXXXXXXXHAIQELADAIISAKQLKVLDLSRNGLSEEDIQSLYSAWASGPR 405
                             H ++EL+ A+  A QLK+LDLS NG S E +++LY +W+S   
Sbjct: 1229 ----------LSLPRKNHIVKELSTALSMANQLKILDLSNNGFSVEALETLYMSWSSSSS 1278

Query: 406  GDGMARKHVAKEVVHFAVDGMNCCGLKPCCRRD 438
              G+A++HV +E VHF V+G  CCG+K CCR+D
Sbjct: 1279 RTGIAQRHVKEETVHFYVEGKMCCGVKSCCRKD 1311



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,842,134
Number of extensions: 342664
Number of successful extensions: 1355
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1349
Number of HSP's successfully gapped: 2
Length of query: 441
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 339
Effective length of database: 8,310,137
Effective search space: 2817136443
Effective search space used: 2817136443
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)