Os02g0768600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Chloroplast inorganic pyrophosphatase (EC 3.6.1.1).
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Os02g0768600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Chloroplast inorganic pyrophosphatase (EC 3.6.1.1).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.11 | 0.216 | 14.3 | -1.24 | 0.818 | 0.926 | 0.582 | 0.299 | -0.31 | 23.7 | 21.36 | 373 | -- | -- |
| 21.18 | 0.214 | 14.3 | -1.28 | 0.816 | 0.939 | 0.597 | -- | -0.329 | 23.7 | 21.4 | 375 | -- | -- |
| 22.18 | 0.219 | 14.3 | -1.17 | 0.684 | 0.834 | -- | 0.763 | -0.262 | 23.1 | 21.33 | 598 | -- | -- |
| 22.25 | 0.22 | 14.3 | -1.33 | 0.71 | 0.935 | -- | -- | -0.324 | 23.5 | 21.57 | 533 | -- | -- |
| 42.92 | 0.305 | 14.3 | -1.48 | -- | 1.26 | -- | -0.401 | -0.327 | -- | 23.48 | 788 | -- | -- |
| 37.51 | 0.287 | 14.3 | -1.09 | 0.89 | -- | 0.628 | -- | -0.166 | 22 | -- | -- | -- | -- |
| 39.05 | 0.293 | 14.3 | -1.11 | 0.886 | -- | -- | -- | -0.167 | 22 | -- | -- | -- | -- |
| 42.9 | 0.305 | 14.3 | -1.41 | -- | 1.24 | -- | -- | -0.342 | -- | 23.21 | 787 | -- | -- |
| 65.38 | 0.377 | 14.3 | -- | 0.788 | 0.556 | -- | -- | -0.116 | 22.9 | 22.56 | 415 | -- | -- |
| 86.37 | 0.434 | 14.3 | -1.1 | -- | -- | -- | -- | -0.166 | -- | -- | -- | -- | -- |
| 71.62 | 0.396 | 14.3 | -- | 0.882 | -- | -- | -- | -0.0433 | 21.9 | -- | -- | -- | -- |
| 91.8 | 0.446 | 14.3 | -- | -- | 0.946 | -- | -- | -0.12 | -- | 24.2 | 756 | -- | -- |
| 118.33 | 0.508 | 14.2 | -- | -- | -- | -- | -- | -0.0444 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.05 | temperature | 20 | 720 | > th | dose dependent | rect. | 2 | 18 |
| 2 | 21.06 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 16 |
| 3 | 21.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 22 |
| 4 | 21.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 20 |
| 39 | 21.40 | temperature | 30 | 720 | < th | dose dependent | sin | 23 | NA |
| 54 | 21.48 | temperature | 20 | 720 | > th | dose dependent | sin | 1 | NA |
| 93 | 21.63 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |
| 108 | 21.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 123 | 21.71 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 193 | 21.94 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 281 | 22.19 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 437 | 22.56 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 15 |
| 438 | 22.56 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 16 |
| 545 | 22.70 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 23 |
| 749 | 22.89 | temperature | 20 | 1440 | > th | dose dependent | rect. | 9 | 6 |
| 750 | 22.89 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 12 |
| 788 | 22.92 | temperature | 20 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 860 | 22.97 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 2 |