BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0768600 Os02g0768600|AK060304
(294 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G09650.1 | chr5:2991331-2993117 REVERSE LENGTH=301 407 e-114
AT4G01480.1 | chr4:626539-627758 FORWARD LENGTH=217 79 2e-15
AT1G01050.1 | chr1:31382-32670 REVERSE LENGTH=213 79 4e-15
AT3G53620.1 | chr3:19881491-19883308 FORWARD LENGTH=217 77 1e-14
AT2G46860.1 | chr2:19253843-19255060 FORWARD LENGTH=217 74 1e-13
AT2G18230.1 | chr2:7932139-7933560 REVERSE LENGTH=219 71 6e-13
>AT5G09650.1 | chr5:2991331-2993117 REVERSE LENGTH=301
Length = 300
Score = 407 bits (1045), Expect = e-114, Method: Compositional matrix adjust.
Identities = 190/236 (80%), Positives = 216/236 (91%)
Query: 58 ELRPKEQGLPETLDYRVFLVDGGGRKVSPWHDVPLRAGDGVFHFVVEIPKESSAKMEVAT 117
+++ +E+G E+LDYRVF +DG G+KVSPWHD+PL GDGVF+F+VEIPKES AKMEVAT
Sbjct: 64 QVKVQEEGPAESLDYRVFFLDGSGKKVSPWHDIPLTLGDGVFNFIVEIPKESKAKMEVAT 123
Query: 118 DESFTPIKQDTKKGNLRYYPYNINWNYGLFPQTWEDPTLANTDVEGAFGDNDPVDVVEIG 177
DE FTPIKQDTKKG LRYYPYNINWNYGL PQTWEDP+ AN++VEG FGDNDPVDVVEIG
Sbjct: 124 DEDFTPIKQDTKKGKLRYYPYNINWNYGLLPQTWEDPSHANSEVEGCFGDNDPVDVVEIG 183
Query: 178 ERRANIGDVLKVKPLAALAMIDEGELDWKIVAISLDDPKASLVNDVDDVEKHFPGTLTAI 237
E + IGD+LK+KPLAALAMIDEGELDWKIVAISLDDPKA LVNDV+DVEKHFPGTLTAI
Sbjct: 184 ETQRKIGDILKIKPLAALAMIDEGELDWKIVAISLDDPKAHLVNDVEDVEKHFPGTLTAI 243
Query: 238 RDWFRDYKIPDGKPANRFGLGNKPTSKEYALKVIEETNESWEKLVKRNIPAGELSL 293
RDWFRDYKIPDGKPANRFGLG+KP +K+YALK+I+ETNESW KLVKR++ AG+LSL
Sbjct: 244 RDWFRDYKIPDGKPANRFGLGDKPANKDYALKIIQETNESWAKLVKRSVDAGDLSL 299
>AT4G01480.1 | chr4:626539-627758 FORWARD LENGTH=217
Length = 216
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 54/161 (33%), Positives = 84/161 (52%), Gaps = 23/161 (14%)
Query: 86 PWHDVPLRAGDGV-FHFVVEIPKESSAKMEVATDESFTPIKQDTKKGNLRYYPYNINWNY 144
PWHD+ + G V F+ V+EI K S K E+ D+ IK D + YP+N Y
Sbjct: 39 PWHDLEIGPGAPVIFNVVIEISKGSKVKYEL--DKKTGLIKVDRILYSSVVYPHN----Y 92
Query: 145 GLFPQTWEDPTLANTDVEGAFGDNDPVDVVEIGERRANIGDVLKVKPLAALAMIDEGELD 204
G P+T + DNDP+DV+ I + G L+ + + + MID+GE D
Sbjct: 93 GFVPRTLCE-------------DNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQGEKD 139
Query: 205 WKIVAISLDDPKASLVNDVDDVEKHFPGTLTAIRDWFRDYK 245
KI+A+ +DDP+ + +++++ H L+ IR +F DYK
Sbjct: 140 DKIIAVCVDDPEYKHITNINELPPH---RLSEIRRFFEDYK 177
>AT1G01050.1 | chr1:31382-32670 REVERSE LENGTH=213
Length = 212
Score = 78.6 bits (192), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/166 (33%), Positives = 84/166 (50%), Gaps = 23/166 (13%)
Query: 86 PWHDVPLRAGD-GVFHFVVEIPKESSAKMEVATDESFTPIKQDTKKGNLRYYPYNINWNY 144
PWHD+ + G +F+ VVEI K S K E+ D+ IK D + YP+N Y
Sbjct: 35 PWHDLEIGPGAPQIFNVVVEITKGSKVKYEL--DKKTGLIKVDRILYSSVVYPHN----Y 88
Query: 145 GLFPQTWEDPTLANTDVEGAFGDNDPVDVVEIGERRANIGDVLKVKPLAALAMIDEGELD 204
G P+T + DNDP+DV+ I + G L+ + + + MID+GE D
Sbjct: 89 GFVPRTLCE-------------DNDPIDVLVIMQEPVLPGCFLRARAIGLMPMIDQGEKD 135
Query: 205 WKIVAISLDDPKASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGK 250
KI+A+ +DDP+ D+ ++ H L+ IR +F DYK + K
Sbjct: 136 DKIIAVCVDDPEYKHYTDIKELPPH---RLSEIRRFFEDYKKNENK 178
>AT3G53620.1 | chr3:19881491-19883308 FORWARD LENGTH=217
Length = 216
Score = 77.0 bits (188), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 62 KEQGLPETLDYRVFLVDGGGRKVS--PWHDVPLR-AGDGVFHFVVEIPKESSAKMEVATD 118
K LP TL+ R+ L R V+ PWHD+ + +F+ VVEI K S K E+ D
Sbjct: 15 KHVSLP-TLNERI-LSSMSHRSVAAHPWHDLEIGPEAPIIFNCVVEIGKGSKVKYEL--D 70
Query: 119 ESFTPIKQDTKKGNLRYYPYNINWNYGLFPQTWEDPTLANTDVEGAFGDNDPVDVVEIGE 178
++ IK D + YP+N YG P+T + D+DP+DV+ I +
Sbjct: 71 KTTGLIKVDRILYSSVVYPHN----YGFIPRTLCE-------------DSDPIDVLVIMQ 113
Query: 179 RRANIGDVLKVKPLAALAMIDEGELDWKIVAISLDDPKASLVNDVDDVEKHFPGTLTAIR 238
G L+ K + + MID+GE D KI+A+ DDP+ ND+ ++ H + IR
Sbjct: 114 EPVIPGCFLRAKAIGLMPMIDQGEKDDKIIAVCADDPEYRHYNDISELPPH---RMAEIR 170
Query: 239 DWFRDYK 245
+F DYK
Sbjct: 171 RFFEDYK 177
>AT2G46860.1 | chr2:19253843-19255060 FORWARD LENGTH=217
Length = 216
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 80/166 (48%), Gaps = 23/166 (13%)
Query: 86 PWHDVPLR-AGDGVFHFVVEIPKESSAKMEVATDESFTPIKQDTKKGNLRYYPYNINWNY 144
PWHD+ + VF+ VVEI K S K E+ D+ IK D + YP+N Y
Sbjct: 39 PWHDLEIGPEAPLVFNVVVEITKGSKVKYEL--DKKTGLIKVDRILYSSVVYPHN----Y 92
Query: 145 GLFPQTWEDPTLANTDVEGAFGDNDPVDVVEIGERRANIGDVLKVKPLAALAMIDEGELD 204
G P+T + DNDP+DV+ + + G L+ + + + MID+GE D
Sbjct: 93 GFIPRTLCE-------------DNDPLDVLVLMQEPVLPGCFLRARAIGLMPMIDQGEKD 139
Query: 205 WKIVAISLDDPKASLVNDVDDVEKHFPGTLTAIRDWFRDYKIPDGK 250
KI+A+ DDP+ D+ + P L IR +F DYK + K
Sbjct: 140 DKIIAVCADDPEYKHFTDIKQLA---PHRLQEIRRFFEDYKKNENK 182
>AT2G18230.1 | chr2:7932139-7933560 REVERSE LENGTH=219
Length = 218
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 79/161 (49%), Gaps = 23/161 (14%)
Query: 86 PWHDVPLR-AGDGVFHFVVEIPKESSAKMEVATDESFTPIKQDTKKGNLRYYPYNINWNY 144
PWHD+ + VF+ VVEI K K E+ D++ IK D + YP+N Y
Sbjct: 41 PWHDLEIGPEAPTVFNCVVEISKGGKVKYEL--DKNSGLIKVDRVLYSSIVYPHN----Y 94
Query: 145 GLFPQTWEDPTLANTDVEGAFGDNDPVDVVEIGERRANIGDVLKVKPLAALAMIDEGELD 204
G P+T + D+DP+DV+ + + G L+ + + + MID+GE D
Sbjct: 95 GFIPRTICE-------------DSDPMDVLVLMQEPVLTGSFLRARAIGLMPMIDQGEKD 141
Query: 205 WKIVAISLDDPKASLVNDVDDVEKHFPGTLTAIRDWFRDYK 245
KI+A+ DDP+ D+ ++ H L IR +F DYK
Sbjct: 142 DKIIAVCADDPEFRHYRDIKELPPH---RLAEIRRFFEDYK 179
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.136 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,431,454
Number of extensions: 281013
Number of successful extensions: 459
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 458
Number of HSP's successfully gapped: 6
Length of query: 294
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 196
Effective length of database: 8,419,801
Effective search space: 1650280996
Effective search space used: 1650280996
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 111 (47.4 bits)