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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os02g0762900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : EF-Hand type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.9 (0.0511) R2 : 0.348
β1 : 1.19 (0.187) R2dD : 0.0602 R2D : 0.0197
β2 : 1.75 (0.133) R2dC : 0.247 R2C : 0.241
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.651 (0.109) R2dN8 : 0.0682 R2N8 : 0.0363
σ : 0.961
deviance : 420.97
__
_____
C
peak time of C : 5.55
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
397.68 0.937 3.91 1.32 1.72 0.623 0.981 1.72 0.59 5.83 35.3 1307 -- --
402.06 0.934 3.91 1.12 1.73 0.738 1.01 -- 0.563 5.84 40 1272 -- --
399.97 0.931 3.91 1.33 1.73 0.641 -- 1.75 0.589 5.79 37 1306 -- --
404.18 0.936 3.92 1.14 1.72 0.741 -- -- 0.543 5.78 40 1306 -- --
553.73 1.1 3.94 1.42 -- 0.75 -- 2.04 0.642 -- 41.34 1346 -- --
418.56 0.959 3.9 1.19 1.74 -- 0.991 -- 0.655 5.57 -- -- -- --
420.97 0.961 3.9 1.19 1.75 -- -- -- 0.651 5.55 -- -- -- --
558.78 1.1 3.93 1.24 -- 0.908 -- -- 0.676 -- 50 1310 -- --
437.87 0.975 3.97 -- 1.74 0.82 -- -- 0.404 5.78 39.5 1304 -- --
579.91 1.13 3.93 1.25 -- -- -- -- 0.693 -- -- -- -- --
458.38 1 3.93 -- 1.77 -- -- -- 0.518 5.52 -- -- -- --
595.61 1.14 3.99 -- -- 0.899 -- -- 0.417 -- 40 1340 -- --
621.04 1.16 3.96 -- -- -- -- -- 0.554 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 388.53 temperature 20.0 10 > th dose dependent rect. 3 6
2 388.58 temperature 20.0 270 > th dose dependent rect. 2 5
7 390.41 radiation 1.0 90 < th dose independent sin 12 NA
8 390.75 radiation 1.0 90 > th dose independent sin 12 NA
10 391.09 humidity 90.0 10 < th dose independent rect. 4 5
21 392.40 atmosphere 1015.0 270 < th dose independent rect. 7 18
25 392.84 atmosphere 1015.0 270 < th dose independent rect. 18 8
26 392.93 radiation 1.0 90 > th dose independent rect. 16 15
28 393.10 temperature 25.0 30 > th dose independent rect. 4 5
32 393.38 radiation 1.0 90 < th dose dependent sin 12 NA
34 393.46 humidity 80.0 270 < th dose independent rect. 13 9
40 393.69 temperature 25.0 30 > th dose independent rect. 2 7
45 393.80 radiation 1.0 90 > th dose independent rect. 15 18
49 393.95 atmosphere 1015.0 270 < th dose independent rect. 5 22
52 394.29 wind 3.0 1440 < th dose dependent rect. 3 1
54 394.33 atmosphere 1015.0 270 < th dose dependent rect. 13 5
58 394.42 radiation 1.0 90 < th dose independent rect. 5 22
62 394.48 wind 5.0 270 < th dose independent rect. 18 8
66 394.65 atmosphere 1015.0 90 < th dose independent rect. 9 18
70 394.72 wind 3.0 30 < th dose independent rect. 3 7
73 394.84 atmosphere 1015.0 270 < th dose independent rect. 19 17
74 394.85 atmosphere 1015.0 270 < th dose independent rect. 21 15
82 394.98 radiation 1.0 90 < th dose independent rect. 19 17
86 395.08 radiation 1.0 90 < th dose independent rect. 19 22
97 395.26 radiation 1.0 1440 > th dose independent rect. 5 1
100 395.29 radiation 1.0 1440 < th dose independent rect. 23 7
103 395.32 radiation 1.0 1440 < th dose independent rect. 20 10
115 395.42 radiation 1.0 1440 < th dose independent rect. 5 1
126 395.44 humidity 50.0 14400 > th dose dependent rect. 14 1
137 395.66 radiation 1.0 270 < th dose dependent rect. 5 21
138 395.67 humidity 90.0 14400 < th dose dependent rect. 14 2
154 395.91 humidity 70.0 14400 > th dose dependent rect. 10 7
159 395.98 wind 3.0 14400 < th dose independent rect. 3 1
164 396.00 humidity 80.0 14400 < th dose independent rect. 9 10
167 396.01 temperature 20.0 270 > th dose independent rect. 8 15
187 396.09 humidity 80.0 14400 > th dose independent rect. 9 10
190 396.10 humidity 80.0 14400 > th dose independent rect. 11 8
192 396.10 radiation 40.0 1440 > th dose independent rect. 14 20
204 396.15 atmosphere 1005.0 270 < th dose independent rect. 14 3
243 396.27 wind 1.0 270 > th dose independent rect. 7 6
246 396.28 wind 1.0 14400 > th dose dependent rect. 3 1
248 396.29 wind 3.0 14400 > th dose independent rect. 3 1
270 396.35 humidity 90.0 30 < th dose independent rect. 15 18
273 396.37 temperature 25.0 90 > th dose independent rect. 6 2
327 396.56 precipitation 0.1 270 < th dose independent rect. 2 15
331 396.56 precipitation 0.1 270 < th dose dependent rect. 2 15
344 396.60 precipitation 0.1 270 < th dose independent rect. 13 18
347 396.60 precipitation 0.1 270 < th dose dependent rect. 13 18
361 396.66 humidity 80.0 14400 < th dose independent rect. 14 3
396 396.76 wind 5.0 14400 < th dose dependent rect. 3 1
429 396.86 precipitation 0.1 270 < th dose independent rect. 1 6
431 396.86 precipitation 0.1 270 < th dose dependent rect. 1 6
460 396.95 wind 9.0 90 < th dose dependent rect. 18 9
498 397.06 humidity 50.0 270 > th dose dependent rect. 18 8
510 397.09 radiation 40.0 1440 < th dose independent rect. 14 20
551 397.17 radiation 30.0 1440 > th dose dependent rect. 14 20
553 397.18 humidity 90.0 10 > th dose independent rect. 6 21
568 397.20 humidity 80.0 14400 > th dose independent rect. 14 1
573 397.21 atmosphere 1015.0 270 < th dose independent rect. 16 22
580 397.22 atmosphere 1015.0 90 < th dose dependent rect. 15 7
587 397.24 humidity 80.0 14400 > th dose independent sin 22 NA
599 397.26 wind 9.0 270 < th dose dependent rect. 2 16
602 397.27 atmosphere 1000.0 270 > th dose independent rect. 18 8
623 397.30 humidity 80.0 270 > th dose independent rect. 1 6
637 397.33 humidity 80.0 14400 > th dose independent rect. 16 1
649 397.35 humidity 60.0 14400 > th dose dependent sin 21 NA
651 397.36 radiation 1.0 1440 > th dose independent sin 10 NA
681 397.42 humidity 80.0 14400 < th dose independent sin 22 NA
702 397.45 radiation 1.0 1440 < th dose independent sin 10 NA
735 397.51 humidity 60.0 14400 > th dose independent rect. 12 13
742 397.52 humidity 60.0 14400 > th dose independent rect. 12 8
769 397.56 wind 5.0 10 < th dose dependent rect. 3 7
776 397.58 humidity 70.0 14400 < th dose independent rect. 18 1
777 397.58 precipitation 0.1 270 < th dose independent rect. 24 8
780 397.58 precipitation 0.1 270 < th dose dependent rect. 24 8
793 397.59 humidity 60.0 14400 > th dose independent rect. 12 5
805 397.60 humidity 80.0 14400 > th dose dependent rect. 19 1
813 397.61 humidity 90.0 14400 < th dose dependent sin 20 NA
831 397.63 atmosphere 1015.0 30 < th dose independent rect. 22 17
832 397.63 wind 9.0 270 < th dose independent rect. 13 18
843 397.64 radiation 40.0 1440 > th dose dependent rect. 8 2
874 397.66 humidity 80.0 270 > th dose independent rect. 19 4
875 397.66 wind 3.0 270 < th dose independent rect. 2 5
902 397.70 humidity 60.0 14400 > th dose independent rect. 13 1
927 397.72 temperature 20.0 270 > th dose independent rect. 18 7
940 397.75 radiation 40.0 4320 < th dose independent rect. 9 1
957 397.77 humidity 70.0 14400 < th dose dependent sin 14 NA
958 397.78 radiation 1.0 270 > th dose independent rect. 5 1
961 397.78 atmosphere 1015.0 270 < th dose dependent rect. 13 18
962 397.79 humidity 80.0 14400 > th dose independent rect. 9 3