BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0762900 Os02g0762900|Os02g0762900
         (100 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G43290.1  | chr2:17991308-17991955 REVERSE LENGTH=216           52   6e-08

>AT2G43290.1 | chr2:17991308-17991955 REVERSE LENGTH=216
          Length = 215

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 24/63 (38%), Positives = 35/63 (55%)

Query: 19  EFRAWLSQFDANGDGRIGREELERALRSLNLWFAWWKAREAMREADANRNGVVDRDEMVR 78
           E +     FD NGDGRI +EEL  +L +L ++       + + + DAN +G VD DE   
Sbjct: 65  ELKRVFQMFDKNGDGRITKEELNDSLENLGIYIPDKDLTQMIHKIDANGDGCVDIDEFES 124

Query: 79  LYA 81
           LY+
Sbjct: 125 LYS 127



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.324    0.134    0.424 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,186,327
Number of extensions: 78284
Number of successful extensions: 513
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 533
Number of HSP's successfully gapped: 1
Length of query: 100
Length of database: 11,106,569
Length adjustment: 70
Effective length of query: 30
Effective length of database: 9,187,449
Effective search space: 275623470
Effective search space used: 275623470
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 104 (44.7 bits)