Os02g0751800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Phosphoglycerate mutase 1 family protein.
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Os02g0751800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Phosphoglycerate mutase 1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 40.03 | 0.297 | 8.79 | -0.821 | 0.934 | -0.607 | 0.795 | 1.43 | 0.217 | 8.67 | 29.8 | 1247 | -- | -- |
| 40.38 | 0.296 | 8.76 | -0.515 | 0.936 | -0.453 | 0.794 | -- | 0.236 | 8.65 | 29.7 | 1248 | -- | -- |
| 42.08 | 0.302 | 8.79 | -0.814 | 0.934 | -0.606 | -- | 1.52 | 0.217 | 8.57 | 29.8 | 1254 | -- | -- |
| 42.48 | 0.304 | 8.75 | -0.483 | 0.928 | -0.44 | -- | -- | 0.257 | 8.58 | 29.8 | 1254 | -- | -- |
| 89.31 | 0.44 | 8.81 | -0.763 | -- | -0.549 | -- | 1.24 | 0.236 | -- | 29.7 | 1444 | -- | -- |
| 50.3 | 0.332 | 8.76 | -0.368 | 0.907 | -- | 0.751 | -- | 0.224 | 8.37 | -- | -- | -- | -- |
| 52.05 | 0.338 | 8.76 | -0.346 | 0.908 | -- | -- | -- | 0.223 | 8.28 | -- | -- | -- | -- |
| 89.74 | 0.441 | 8.77 | -0.457 | -- | -0.379 | -- | -- | 0.317 | -- | 30.5 | 1398 | -- | -- |
| 48.36 | 0.324 | 8.74 | -- | 0.923 | -0.363 | -- | -- | 0.303 | 8.56 | 29.71 | 1249 | -- | -- |
| 97.7 | 0.462 | 8.79 | -0.34 | -- | -- | -- | -- | 0.233 | -- | -- | -- | -- | -- |
| 55.2 | 0.348 | 8.75 | -- | 0.906 | -- | -- | -- | 0.262 | 8.31 | -- | -- | -- | -- |
| 94.95 | 0.454 | 8.76 | -- | -- | -0.316 | -- | -- | 0.352 | -- | 30.69 | 1403 | -- | -- |
| 100.75 | 0.469 | 8.78 | -- | -- | -- | -- | -- | 0.271 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 36.92 | humidity | 50 | 720 | > th | dose dependent | rect. | 17 | 2 |
| 2 | 37.00 | humidity | 90 | 720 | < th | dose dependent | rect. | 19 | 2 |
| 13 | 37.65 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 2 |
| 22 | 37.99 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 10 |
| 23 | 38.01 | humidity | 50 | 720 | > th | dose dependent | rect. | 16 | 11 |
| 41 | 38.59 | humidity | 80 | 720 | > th | dose independent | rect. | 16 | 5 |
| 43 | 38.59 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 5 |
| 50 | 38.66 | humidity | 80 | 720 | < th | dose independent | rect. | 12 | 10 |
| 54 | 38.70 | humidity | 70 | 720 | > th | dose independent | rect. | 16 | 11 |
| 56 | 38.72 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 11 |
| 59 | 38.76 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 9 |
| 63 | 38.83 | humidity | 80 | 720 | > th | dose independent | rect. | 18 | 2 |
| 71 | 38.93 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 13 |
| 73 | 38.97 | humidity | 80 | 720 | < th | dose independent | rect. | 19 | 2 |
| 87 | 39.09 | radiation | 1 | 720 | < th | dose dependent | rect. | 8 | 19 |
| 89 | 39.11 | radiation | 1 | 720 | < th | dose dependent | rect. | 10 | 17 |
| 101 | 39.24 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 1 |
| 160 | 39.53 | radiation | 1 | 720 | > th | dose independent | rect. | 11 | 19 |
| 240 | 39.78 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 11 |
| 259 | 39.82 | radiation | 1 | 720 | < th | dose independent | rect. | 13 | 6 |
| 288 | 39.88 | radiation | 1 | 720 | < th | dose independent | rect. | 8 | 19 |
| 292 | 39.89 | radiation | 1 | 720 | < th | dose independent | rect. | 14 | 13 |
| 324 | 39.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 19 |
| 325 | 39.98 | radiation | 1 | 720 | < th | dose independent | rect. | 16 | 3 |
| 343 | 40.02 | humidity | 70 | 720 | > th | dose dependent | sin | 17 | NA |
| 413 | 40.15 | humidity | 80 | 720 | > th | dose independent | rect. | 12 | 15 |
| 458 | 40.24 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 3 |
| 498 | 40.31 | humidity | 80 | 720 | > th | dose independent | sin | 17 | NA |
| 510 | 40.32 | humidity | 80 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 520 | 40.33 | temperature | 25 | 1440 | > th | dose dependent | rect. | 12 | 19 |
| 534 | 40.36 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 4 |
| 540 | 40.37 | temperature | 30 | 720 | < th | dose dependent | rect. | 18 | 1 |
| 555 | 40.40 | humidity | 80 | 720 | > th | dose dependent | rect. | 11 | 12 |
| 568 | 40.42 | temperature | 25 | 1440 | > th | dose dependent | sin | 18 | NA |
| 577 | 40.43 | wind | 5 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 595 | 40.45 | temperature | 25 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 597 | 40.45 | radiation | 30 | 1440 | < th | dose dependent | rect. | 18 | 11 |
| 613 | 40.47 | temperature | 25 | 720 | > th | dose dependent | rect. | 18 | 3 |
| 620 | 40.48 | temperature | 10 | 1440 | > th | dose dependent | sin | 20 | NA |
| 636 | 40.49 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 3 |
| 651 | 40.51 | wind | 7 | 43200 | > th | dose independent | sin | 14 | NA |
| 685 | 40.53 | radiation | 1 | 720 | < th | dose dependent | rect. | 22 | 21 |
| 687 | 40.54 | wind | 7 | 43200 | < th | dose independent | sin | 14 | NA |
| 700 | 40.55 | wind | 5 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 717 | 40.57 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 1 |
| 751 | 40.60 | wind | 5 | 43200 | > th | dose dependent | sin | 14 | NA |
| 757 | 40.60 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 13 |
| 763 | 40.61 | wind | 7 | 43200 | < th | dose independent | rect. | 14 | 22 |
| 764 | 40.61 | wind | 5 | 43200 | < th | dose independent | rect. | 18 | 22 |
| 776 | 40.62 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 781 | 40.62 | wind | 5 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 794 | 40.63 | wind | 9 | 43200 | > th | dose independent | rect. | 17 | 6 |
| 821 | 40.64 | humidity | 70 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 834 | 40.65 | wind | 5 | 43200 | > th | dose independent | no | NA | NA |
| 841 | 40.65 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 21 |
| 844 | 40.65 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 845 | 40.65 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 858 | 40.66 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 18 |
| 859 | 40.66 | wind | 5 | 43200 | > th | dose independent | rect. | 23 | 23 |
| 870 | 40.67 | wind | 5 | 43200 | < th | dose independent | rect. | 23 | 18 |
| 871 | 40.67 | wind | 5 | 43200 | > th | dose independent | rect. | 2 | 23 |
| 881 | 40.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 20 |
| 885 | 40.67 | wind | 5 | 43200 | > th | dose dependent | rect. | 17 | 23 |
| 886 | 40.68 | humidity | 70 | 14400 | < th | dose independent | rect. | 19 | 3 |
| 899 | 40.68 | wind | 5 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 960 | 40.70 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 23 |
| 974 | 40.71 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 15 |
| 991 | 40.72 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |