BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0751800 Os02g0751800|AK101802
(332 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0751800 Phosphoglycerate mutase 1 family protein 694 0.0
Os06g0223200 269 3e-72
>Os02g0751800 Phosphoglycerate mutase 1 family protein
Length = 332
Score = 694 bits (1790), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/332 (100%), Positives = 332/332 (100%)
Query: 1 MAASTSQHALVSVKSLCTGANFGFEKRTSKVRFVLVGRCCSGTRKLGLVCASNSHSSVME 60
MAASTSQHALVSVKSLCTGANFGFEKRTSKVRFVLVGRCCSGTRKLGLVCASNSHSSVME
Sbjct: 1 MAASTSQHALVSVKSLCTGANFGFEKRTSKVRFVLVGRCCSGTRKLGLVCASNSHSSVME 60
Query: 61 PAQLPLSPESGNTPKKSSESALILIRHGESLWNEKNLFTGCVDVPLTPKGVDEAIEAGKR 120
PAQLPLSPESGNTPKKSSESALILIRHGESLWNEKNLFTGCVDVPLTPKGVDEAIEAGKR
Sbjct: 61 PAQLPLSPESGNTPKKSSESALILIRHGESLWNEKNLFTGCVDVPLTPKGVDEAIEAGKR 120
Query: 121 ICNIPVDVIYTSSLIRAQMTAMLAMMQHRRKKVPIVVHSESEQAHRWSKIYSEETKKQSI 180
ICNIPVDVIYTSSLIRAQMTAMLAMMQHRRKKVPIVVHSESEQAHRWSKIYSEETKKQSI
Sbjct: 121 ICNIPVDVIYTSSLIRAQMTAMLAMMQHRRKKVPIVVHSESEQAHRWSKIYSEETKKQSI 180
Query: 181 PVITAWQLNERMYGELQGLNKQETADRFGKEQVHEWRRSYDIPPPNGESLEMCAERAVAY 240
PVITAWQLNERMYGELQGLNKQETADRFGKEQVHEWRRSYDIPPPNGESLEMCAERAVAY
Sbjct: 181 PVITAWQLNERMYGELQGLNKQETADRFGKEQVHEWRRSYDIPPPNGESLEMCAERAVAY 240
Query: 241 FKDQIVPQLVAGKHVMIAAHGNSLRSIIMHLDKLTSQEVISLELSTGIPMLYIFKEGKFI 300
FKDQIVPQLVAGKHVMIAAHGNSLRSIIMHLDKLTSQEVISLELSTGIPMLYIFKEGKFI
Sbjct: 241 FKDQIVPQLVAGKHVMIAAHGNSLRSIIMHLDKLTSQEVISLELSTGIPMLYIFKEGKFI 300
Query: 301 RRGSPAGPSEAGVYAYTRSLAQYRQKLDNMFQ 332
RRGSPAGPSEAGVYAYTRSLAQYRQKLDNMFQ
Sbjct: 301 RRGSPAGPSEAGVYAYTRSLAQYRQKLDNMFQ 332
>Os06g0223200
Length = 150
Score = 269 bits (687), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 127/141 (90%), Positives = 131/141 (92%)
Query: 190 ERMYGELQGLNKQETADRFGKEQVHEWRRSYDIPPPNGESLEMCAERAVAYFKDQIVPQL 249
E YGELQGLNKQETADRFG EQVH+WRRSYDIPPPNGESLEMCAERAVAYFK+ +VPQL
Sbjct: 9 EVRYGELQGLNKQETADRFGNEQVHKWRRSYDIPPPNGESLEMCAERAVAYFKEHVVPQL 68
Query: 250 VAGKHVMIAAHGNSLRSIIMHLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPAGPS 309
AGKHVMIAAHGNSLRSIIM LDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSP GPS
Sbjct: 69 TAGKHVMIAAHGNSLRSIIMQLDKLTSQEVISLELSTGIPMLYIFKEGKFIRRGSPVGPS 128
Query: 310 EAGVYAYTRSLAQYRQKLDNM 330
EA V AYTR LAQYRQKLD+M
Sbjct: 129 EASVCAYTRKLAQYRQKLDSM 149
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,263,357
Number of extensions: 456145
Number of successful extensions: 1057
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 2
Length of query: 332
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 231
Effective length of database: 11,762,187
Effective search space: 2717065197
Effective search space used: 2717065197
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)