BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0751800 Os02g0751800|AK101802
(332 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G22170.1 | chr1:7826603-7828055 FORWARD LENGTH=335 477 e-135
AT1G78050.1 | chr1:29348095-29349592 FORWARD LENGTH=333 449 e-127
AT3G50520.1 | chr3:18748058-18749418 FORWARD LENGTH=231 53 2e-07
>AT1G22170.1 | chr1:7826603-7828055 FORWARD LENGTH=335
Length = 334
Score = 477 bits (1227), Expect = e-135, Method: Compositional matrix adjust.
Identities = 237/337 (70%), Positives = 271/337 (80%), Gaps = 18/337 (5%)
Query: 1 MAASTSQHALVSVKSL-----CTGANFGFEKRTSKVRFVLVGRCCSGTRKLGLVCASNSH 55
MA +TS ++VS SL T + GF+ + S T K C +
Sbjct: 1 MATATSHQSVVSFASLRSSPSSTISQCGFK----------IDSSLSFTSKKTNFCKIKAM 50
Query: 56 SSVMEPAQLPLSPES---GNTPKKSSESALILIRHGESLWNEKNLFTGCVDVPLTPKGVD 112
+S + LSP N+ KKS+E+ALILIRHGESLWNEKNLFTGCVDVPLT KGV+
Sbjct: 51 ASSVSYDNTLLSPSKTIPDNSQKKSNEAALILIRHGESLWNEKNLFTGCVDVPLTEKGVE 110
Query: 113 EAIEAGKRICNIPVDVIYTSSLIRAQMTAMLAMMQHRRKKVPIVVHSESEQAHRWSKIYS 172
EAIEAGKRI NIPVDVI+TSSLIRAQMTAMLAM+QHRRKKVPI++H ESEQA WS+++S
Sbjct: 111 EAIEAGKRISNIPVDVIFTSSLIRAQMTAMLAMIQHRRKKVPIILHDESEQAKTWSQVFS 170
Query: 173 EETKKQSIPVITAWQLNERMYGELQGLNKQETADRFGKEQVHEWRRSYDIPPPNGESLEM 232
+ETK QSIPVI AWQLNERMYGELQGLNKQETA+R+GKEQVHEWRRSYDIPPP GESLEM
Sbjct: 171 DETKNQSIPVIPAWQLNERMYGELQGLNKQETAERYGKEQVHEWRRSYDIPPPKGESLEM 230
Query: 233 CAERAVAYFKDQIVPQLVAGKHVMIAAHGNSLRSIIMHLDKLTSQEVISLELSTGIPMLY 292
CAERAVAYF+D I P+L AGK+VMIAAHGNSLRSIIM+LDKLT QEVISLELSTGIP+LY
Sbjct: 231 CAERAVAYFQDNIEPKLAAGKNVMIAAHGNSLRSIIMYLDKLTCQEVISLELSTGIPLLY 290
Query: 293 IFKEGKFIRRGSPAGPSEAGVYAYTRSLAQYRQKLDN 329
IFKEGKF++RGSP GP+EAGVYAYT+ LAQYRQKL++
Sbjct: 291 IFKEGKFMKRGSPVGPTEAGVYAYTKRLAQYRQKLED 327
>AT1G78050.1 | chr1:29348095-29349592 FORWARD LENGTH=333
Length = 332
Score = 449 bits (1155), Expect = e-127, Method: Compositional matrix adjust.
Identities = 213/284 (75%), Positives = 248/284 (87%), Gaps = 5/284 (1%)
Query: 49 VCASNSHSSVMEPAQLPLSPESGNTP----KKSSESALILIRHGESLWNEKNLFTGCVDV 104
+ A+ S SV++ L SP S N P KKS+E+ALILIRHGESLWNEKNLFTGCVDV
Sbjct: 45 IEATASQISVVDNTFLSPSP-SKNKPHESKKKSNEAALILIRHGESLWNEKNLFTGCVDV 103
Query: 105 PLTPKGVDEAIEAGKRICNIPVDVIYTSSLIRAQMTAMLAMMQHRRKKVPIVVHSESEQA 164
PLT KGV EAIEAGK+I NIPVD+I+TSSLIRAQMTAMLAM QHRRKKVPI++H+ES +A
Sbjct: 104 PLTQKGVGEAIEAGKKISNIPVDLIFTSSLIRAQMTAMLAMTQHRRKKVPIILHNESVKA 163
Query: 165 HRWSKIYSEETKKQSIPVITAWQLNERMYGELQGLNKQETADRFGKEQVHEWRRSYDIPP 224
WS ++SEET+KQSIPVI AWQLNERMYGELQGLNK+ETA+R+G +QVHEWRRSY+IPP
Sbjct: 164 KTWSHVFSEETRKQSIPVIAAWQLNERMYGELQGLNKKETAERYGTQQVHEWRRSYEIPP 223
Query: 225 PNGESLEMCAERAVAYFKDQIVPQLVAGKHVMIAAHGNSLRSIIMHLDKLTSQEVISLEL 284
P GESLEMCAERAVAYF+D I P+L +G +VMIAAHGNSLRSIIM+LD LTSQEV +L+L
Sbjct: 224 PKGESLEMCAERAVAYFEDNIKPELASGNNVMIAAHGNSLRSIIMYLDDLTSQEVTTLDL 283
Query: 285 STGIPMLYIFKEGKFIRRGSPAGPSEAGVYAYTRSLAQYRQKLD 328
STG+P+LYIFKEGKF++RGSP G +EAGVYAYT+ LAQYR+KLD
Sbjct: 284 STGVPLLYIFKEGKFMKRGSPVGSTEAGVYAYTKRLAQYREKLD 327
>AT3G50520.1 | chr3:18748058-18749418 FORWARD LENGTH=231
Length = 230
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 78/190 (41%), Gaps = 37/190 (19%)
Query: 82 LILIRHGESLWNEKNLFTGCVDVPLTPKGVDEAIEAGKRICN-IPVDVIYTSSLIRAQMT 140
++++RHGE+ WN + G +DV L G +A +R+ + +Y+S L RA T
Sbjct: 16 IVVVRHGETSWNAERKIQGHLDVELNDAGRQQAQRVAERLSKEQKISHVYSSDLKRAFET 75
Query: 141 AMLAMMQHRRKKVPIVVHSESEQAHRWSKIYSEETKKQSIPVITAWQLNERMYGELQGLN 200
A + K + V+T L ER G++QGL
Sbjct: 76 AQIIA-----------------------------AKCGKLEVLTDRDLRERHLGDMQGLV 106
Query: 201 KQETADRFGKEQVHEW---RRSYDIPPPNGESLEMCAERAVAYFKDQIVPQLVAGKHVMI 257
QE A + E + R DI P GESL+ +R Q + G+ +++
Sbjct: 107 YQE-ASKIRPEAYKAFSSNRTDVDI-PGGGESLDKLYDRCTTAL--QRIGDKHKGERIVV 162
Query: 258 AAHGNSLRSI 267
HG +RS+
Sbjct: 163 VTHGGVIRSL 172
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.131 0.382
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,187,012
Number of extensions: 297781
Number of successful extensions: 759
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 761
Number of HSP's successfully gapped: 3
Length of query: 332
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 233
Effective length of database: 8,392,385
Effective search space: 1955425705
Effective search space used: 1955425705
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)