Os02g0744100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SAM (and some other nucleotide) binding motif domain containing protein.
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Os02g0744100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SAM (and some other nucleotide) binding motif domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.75 | 0.247 | 10.7 | -0.043 | 0.203 | -0.396 | 0.51 | 1.03 | -0.331 | 7.05 | 19.82 | 1242 | -- | -- |
| 29.77 | 0.254 | 10.7 | 0.00307 | 0.226 | -0.387 | 0.63 | -- | -0.3 | 7.45 | 19.5 | 1153 | -- | -- |
| 28.18 | 0.247 | 10.7 | -0.0501 | 0.227 | -0.374 | -- | 1.22 | -0.332 | 6.81 | 19.69 | 1170 | -- | -- |
| 31.02 | 0.259 | 10.7 | 0.0383 | 0.275 | -0.399 | -- | -- | -0.321 | 7.24 | 19.12 | 1119 | -- | -- |
| 30.47 | 0.257 | 10.7 | -0.0396 | -- | -0.351 | -- | 1.11 | -0.323 | -- | 19.78 | 1263 | -- | -- |
| 34.65 | 0.276 | 10.7 | 0.0694 | 0.148 | -- | 0.672 | -- | -0.221 | 6.61 | -- | -- | -- | -- |
| 35.46 | 0.279 | 10.7 | 0.0769 | 0.17 | -- | -- | -- | -0.224 | 4.93 | -- | -- | -- | -- |
| 32.9 | 0.267 | 10.7 | 0.000866 | -- | -0.317 | -- | -- | -0.307 | -- | 19.13 | 1364 | -- | -- |
| 31.03 | 0.259 | 10.7 | -- | 0.274 | -0.4 | -- | -- | -0.318 | 7.13 | 19.04 | 1114 | -- | -- |
| 36.97 | 0.284 | 10.7 | 0.0832 | -- | -- | -- | -- | -0.22 | -- | -- | -- | -- | -- |
| 35.61 | 0.279 | 10.7 | -- | 0.171 | -- | -- | -- | -0.233 | 4.91 | -- | -- | -- | -- |
| 32.89 | 0.267 | 10.7 | -- | -- | -0.324 | -- | -- | -0.31 | -- | 19.11 | 1361 | -- | -- |
| 37.15 | 0.285 | 10.7 | -- | -- | -- | -- | -- | -0.229 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 27.23 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 3 | 27.57 | wind | 1 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 4 | 27.75 | wind | 1 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 5 | 27.86 | radiation | 10 | 1440 | < th | dose dependent | rect. | 8 | 7 |
| 6 | 27.88 | wind | 1 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 7 | 27.95 | radiation | 20 | 1440 | < th | dose dependent | rect. | 8 | 5 |
| 10 | 28.03 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 5 |
| 14 | 28.11 | humidity | 90 | 14400 | < th | dose independent | rect. | 24 | 8 |
| 19 | 28.22 | radiation | 20 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 22 | 28.25 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 10 |
| 25 | 28.27 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 29 | 28.31 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 43 | 28.41 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 3 |
| 54 | 28.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 5 | 2 |
| 60 | 28.50 | humidity | 90 | 14400 | < th | dose independent | rect. | 2 | 5 |
| 73 | 28.51 | radiation | 20 | 1440 | < th | dose independent | rect. | 18 | 20 |
| 77 | 28.53 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 3 |
| 78 | 28.53 | humidity | 90 | 14400 | > th | dose independent | rect. | 22 | 5 |
| 87 | 28.55 | humidity | 90 | 14400 | < th | dose independent | rect. | 22 | 5 |
| 129 | 28.67 | radiation | 10 | 1440 | > th | dose independent | rect. | 8 | 5 |
| 143 | 28.74 | humidity | 90 | 14400 | > th | dose independent | sin | 10 | NA |
| 147 | 28.74 | humidity | 90 | 14400 | > th | dose independent | rect. | 17 | 14 |
| 172 | 28.79 | humidity | 90 | 14400 | < th | dose independent | sin | 10 | NA |
| 176 | 28.79 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 12 |
| 181 | 28.80 | humidity | 90 | 14400 | > th | dose independent | rect. | 3 | 5 |
| 208 | 28.82 | radiation | 20 | 1440 | < th | dose independent | sin | 3 | NA |
| 313 | 28.92 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 353 | 28.97 | humidity | 90 | 14400 | > th | dose independent | rect. | 4 | 3 |
| 380 | 28.99 | temperature | 20 | 4320 | > th | dose dependent | rect. | 9 | 6 |
| 393 | 29.01 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 457 | 29.06 | radiation | 20 | 1440 | < th | dose dependent | sin | 2 | NA |
| 542 | 29.08 | temperature | 20 | 4320 | > th | dose dependent | rect. | 11 | 1 |
| 551 | 29.09 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 612 | 29.10 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 2 |
| 651 | 29.12 | radiation | 1 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 653 | 29.12 | radiation | 1 | 4320 | < th | dose dependent | rect. | 24 | 5 |
| 657 | 29.12 | radiation | 1 | 4320 | < th | dose dependent | rect. | 19 | 10 |
| 672 | 29.14 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 711 | 29.17 | temperature | 20 | 4320 | > th | dose dependent | sin | 22 | NA |
| 738 | 29.19 | radiation | 1 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 825 | 29.25 | temperature | 10 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 856 | 29.27 | temperature | 10 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 938 | 29.31 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 1 |