BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0744100 Os02g0744100|AK061274
(293 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G69523.1 | chr1:26129827-26131157 FORWARD LENGTH=301 276 6e-75
AT1G69526.2 | chr1:26131493-26132934 FORWARD LENGTH=308 257 4e-69
AT1G69520.1 | chr1:26128386-26129602 FORWARD LENGTH=232 219 2e-57
AT1G20330.1 | chr1:7038968-7040053 REVERSE LENGTH=362 59 2e-09
>AT1G69523.1 | chr1:26129827-26131157 FORWARD LENGTH=301
Length = 300
Score = 276 bits (707), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 131/256 (51%), Positives = 171/256 (66%), Gaps = 5/256 (1%)
Query: 37 LCRCGRRHLIGXXXXXXXXXXXXXXXXXXXXVDPEVMLERVHPARPEWYEKFYATAMDKF 96
C CGRRH IG D L+R+ P +P+WYE+F+A +M+
Sbjct: 47 FCPCGRRHFIGAAMTSMPFLPISPSHASTSTED----LKRLRPPKPDWYEEFFAWSMNSE 102
Query: 97 MKPYEAEIAQYKSKLFSQLMTAGKNILELGVGTGPNLKYYANADGVNIVGVDPNKHMEEY 156
++ YE E++ YK KLF L+ + +LE+G+GTGPN KYY + V+++G+DPN ME Y
Sbjct: 103 VESYEKEVSDYKMKLFDNLVGKAEKVLEIGIGTGPNFKYYTDIPNVSVIGIDPNAKMESY 162
Query: 157 ARAAAVSAGLPPSNFTFRRGVGEALPAEDNSMDAVVGTLVMCSVSDVEMALREIKRVLKP 216
AR +A AGL P FTF +GE++P ED S+DAVVGTLV+CSV+DV L+EIKR+L+P
Sbjct: 163 ARKSATEAGLKPEEFTFVHALGESIPLEDASVDAVVGTLVLCSVTDVTQTLKEIKRILRP 222
Query: 217 GGLYIFIEHVAAPDGSFLRFVQGALNPLQQFVSDGCHLTRETGEIIRDAGFS-SLDLNTT 275
GG+YIFIEHVAA DG+FLR VQ L+PLQQ V+DGCHLTR TGE I +A F+ D+ T
Sbjct: 223 GGIYIFIEHVAAEDGTFLRLVQTVLDPLQQVVADGCHLTRHTGESILEARFNGGADVKKT 282
Query: 276 RLSTAFILSPHVYGVA 291
LS +S HVYGVA
Sbjct: 283 SLSRLAYISSHVYGVA 298
>AT1G69526.2 | chr1:26131493-26132934 FORWARD LENGTH=308
Length = 307
Score = 257 bits (657), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 124/221 (56%), Positives = 158/221 (71%), Gaps = 2/221 (0%)
Query: 75 ERVHPARPEWYEKFYATAMDKFMKPYEAEIAQYKSKLFSQLMTAGKNILELGVGTGPNLK 134
E HP RP+WY++ +A + M+ YEAEIA+YK KLF +L + +LE+GVGTGPNLK
Sbjct: 87 ETFHPQRPDWYKELFAWFLSTGMRSYEAEIAEYKRKLFEKLAGKAETVLEIGVGTGPNLK 146
Query: 135 YYANADGVNIVGVDPNKHMEEYARAAAVSAGLPPSNFTFRRGVGEALPAEDNSMDAVVGT 194
Y+A + V + G+DPN ME+YA +A AG+ P NF F GVGEA+P +D+SMD+VV T
Sbjct: 147 YFAGNENVCVFGMDPNHKMEKYACESAREAGMKPENFRFMHGVGEAIPLDDDSMDSVVAT 206
Query: 195 LVMCSVSDVEMALREIKRVLKPGGLYIFIEHVAAPDGSFLRFVQGALNPLQQFVSDGCHL 254
LV+CSVSDV L EIKRVLKPGG+++FIEHVAA DGSF R VQ L+P+QQ V+DGCHL
Sbjct: 207 LVLCSVSDVTQTLNEIKRVLKPGGIFLFIEHVAAKDGSFFRHVQNVLDPIQQVVADGCHL 266
Query: 255 TRETGEIIRDAGFS-SLDLNTTRL-STAFILSPHVYGVACK 293
TR T I AGF ++N T + S +I+ PHVYG A K
Sbjct: 267 TRNTDLHISAAGFDGGTEINDTAIYSFPWIIRPHVYGAAYK 307
>AT1G69520.1 | chr1:26128386-26129602 FORWARD LENGTH=232
Length = 231
Score = 219 bits (557), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 150/215 (69%), Gaps = 4/215 (1%)
Query: 81 RPEW-YEKFYATAMDKFMKPYEAEIAQYKSKLFSQLMTAGKNILELGVGTGPNLKYYANA 139
R W + Y+ + M+ Y EI K K+F +L + +LE+G+GTGPN++YYA
Sbjct: 15 RGRWCIRRVYSWFFNLLMQSYWNEIEDCKVKIFDKLSEKAEKVLEIGIGTGPNMRYYAAR 74
Query: 140 D-GVNIVGVDPNKHMEEYARAAAVSAGLPPSNFTFRRGVGEALPAEDNSMDAVVGTLVMC 198
+ V + G+DPN M++YAR +A AGL P NF F++GVGEA+P +DNS+DAVV TLV+C
Sbjct: 75 NSNVTLYGLDPNPKMKKYARKSATKAGLKPKNFRFKQGVGEAIPLKDNSVDAVVATLVLC 134
Query: 199 SVSDVEMALREIKRVLKPGGLYIFIEHVAAPDGSFLRFVQGALNPLQQFVSDGCHLTRET 258
SVSDV L+EIKRVL+ GG++IF+EHVAA DGSF + +Q L+PLQQ ++DGCHL R T
Sbjct: 135 SVSDVTQTLKEIKRVLRQGGVFIFLEHVAAKDGSFFKRLQKLLDPLQQRLADGCHLARNT 194
Query: 259 GEIIRDAGFS-SLDLNTTRL-STAFILSPHVYGVA 291
E I +AGFS +++ T + S ++ PH+YG+A
Sbjct: 195 RECILEAGFSGGVEVQTFSMYSFPWMTRPHIYGLA 229
>AT1G20330.1 | chr1:7038968-7040053 REVERSE LENGTH=362
Length = 361
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/168 (29%), Positives = 74/168 (44%), Gaps = 25/168 (14%)
Query: 119 GKNILELGVGTGPNLKYYANADGVNIVGVDPNKHMEEYARAAAVSAGLPP------SNFT 172
G+ IL++G G G ++ A+ N+VG+ N++ AR AGL NF
Sbjct: 124 GQKILDVGCGVGGPMRAIASHSRANVVGITINEYQVNRARLHNKKAGLDALCEVVCGNFL 183
Query: 173 FRRGVGEALPAEDNSMDAVVGTLVMCSVSDVEMALREIKRVLKPGGLYIFIEHVA----- 227
+P +DNS D C +E EI RVLKPG +Y+ E V
Sbjct: 184 -------QMPFDDNSFDGAYSIEATCHAPKLEEVYAEIYRVLKPGSMYVSYEWVTTEKFK 236
Query: 228 APDGSFLRFVQG-----ALNPLQQFVSDGCHLTRETG-EIIRDAGFSS 269
A D + +QG AL L+ +V D ++ G EI+++ +S
Sbjct: 237 AEDDEHVEVIQGIERGDALPGLRAYV-DIAETAKKVGFEIVKEKDLAS 283
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.136 0.407
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,552,564
Number of extensions: 210660
Number of successful extensions: 542
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 542
Number of HSP's successfully gapped: 5
Length of query: 293
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 195
Effective length of database: 8,419,801
Effective search space: 1641861195
Effective search space used: 1641861195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)