BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0744100 Os02g0744100|AK061274
         (293 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0744100  SAM (and some other nucleotide) binding motif ...   529   e-150

>Os02g0744100 SAM (and some other nucleotide) binding motif domain containing
           protein
          Length = 293

 Score =  529 bits (1362), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 257/277 (92%), Positives = 257/277 (92%)

Query: 17  SRPSLTVKTSRVCTTAALPPLCRCGRRHLIGXXXXXXXXXXXXXXXXXXXXVDPEVMLER 76
           SRPSLTVKTSRVCTTAALPPLCRCGRRHLIG                    VDPEVMLER
Sbjct: 17  SRPSLTVKTSRVCTTAALPPLCRCGRRHLIGSTSATALLPLLALPSPAASPVDPEVMLER 76

Query: 77  VHPARPEWYEKFYATAMDKFMKPYEAEIAQYKSKLFSQLMTAGKNILELGVGTGPNLKYY 136
           VHPARPEWYEKFYATAMDKFMKPYEAEIAQYKSKLFSQLMTAGKNILELGVGTGPNLKYY
Sbjct: 77  VHPARPEWYEKFYATAMDKFMKPYEAEIAQYKSKLFSQLMTAGKNILELGVGTGPNLKYY 136

Query: 137 ANADGVNIVGVDPNKHMEEYARAAAVSAGLPPSNFTFRRGVGEALPAEDNSMDAVVGTLV 196
           ANADGVNIVGVDPNKHMEEYARAAAVSAGLPPSNFTFRRGVGEALPAEDNSMDAVVGTLV
Sbjct: 137 ANADGVNIVGVDPNKHMEEYARAAAVSAGLPPSNFTFRRGVGEALPAEDNSMDAVVGTLV 196

Query: 197 MCSVSDVEMALREIKRVLKPGGLYIFIEHVAAPDGSFLRFVQGALNPLQQFVSDGCHLTR 256
           MCSVSDVEMALREIKRVLKPGGLYIFIEHVAAPDGSFLRFVQGALNPLQQFVSDGCHLTR
Sbjct: 197 MCSVSDVEMALREIKRVLKPGGLYIFIEHVAAPDGSFLRFVQGALNPLQQFVSDGCHLTR 256

Query: 257 ETGEIIRDAGFSSLDLNTTRLSTAFILSPHVYGVACK 293
           ETGEIIRDAGFSSLDLNTTRLSTAFILSPHVYGVACK
Sbjct: 257 ETGEIIRDAGFSSLDLNTTRLSTAFILSPHVYGVACK 293



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.321    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,049,973
Number of extensions: 349545
Number of successful extensions: 762
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 762
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 193
Effective length of database: 11,814,401
Effective search space: 2280179393
Effective search space used: 2280179393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)