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Os02g0736500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Nicastrin family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.3 (0.0124) R2 : 0.299
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.364 (0.0261) R2dN8 : 0.386 R2N8 : 0.299
σ : 0.233
deviance : 24.96
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
13.94 0.175 11.3 -0.221 0.287 0.474 -0.102 -0.807 0.39 1.21 92.86 333 -- --
14.63 0.178 11.3 -0.246 0.281 0.426 -0.14 -- 0.386 1.14 92.45 339 -- --
13.96 0.174 11.3 -0.226 0.29 0.488 -- -0.9 0.388 1.27 93.15 317 -- --
14.71 0.179 11.3 -0.243 0.282 0.433 -- -- 0.388 1.03 92.4 346 -- --
18.16 0.198 11.3 -0.258 -- 0.494 -- -0.724 0.414 -- 91.78 189 -- --
16.85 0.192 11.3 -0.22 0.344 -- -0.129 -- 0.332 2.44 -- -- -- --
16.91 0.193 11.3 -0.217 0.344 -- -- -- 0.333 2.42 -- -- -- --
16.84 0.191 11.3 -0.232 -- 0.334 -- -- 0.36 -- 71.57 9 -- --
16.25 0.188 11.3 -- 0.277 0.425 -- -- 0.407 1.1 92.72 344 -- --
23.88 0.228 11.3 -0.202 -- -- -- -- 0.341 -- -- -- -- --
18.15 0.199 11.3 -- 0.339 -- -- -- 0.357 2.41 -- -- -- --
18.03 0.198 11.3 -- -- 0.334 -- -- 0.392 -- 69.58 8 -- --
24.96 0.233 11.3 -- -- -- -- -- 0.364 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 13.49 humidity 90.0 720 > th dose dependent rect. 20 1
2 13.85 radiation 1.0 1440 > th dose independent rect. 11 2
6 13.90 radiation 1.0 1440 < th dose independent rect. 12 1
8 13.90 radiation 1.0 1440 < th dose dependent rect. 12 1
21 13.97 humidity 90.0 720 > th dose dependent rect. 19 4
26 13.98 humidity 90.0 720 > th dose dependent rect. 18 7
56 14.14 humidity 60.0 14400 > th dose independent rect. 24 8
63 14.19 humidity 60.0 14400 > th dose independent rect. 7 1
64 14.19 humidity 90.0 720 > th dose independent rect. 20 1
85 14.36 wind 3.0 14400 < th dose dependent rect. 1 1
86 14.37 precipitation 0.1 270 > th dose independent rect. 2 2
92 14.38 precipitation 0.1 270 > th dose dependent rect. 2 2
96 14.40 humidity 60.0 14400 < th dose independent rect. 6 1
98 14.40 humidity 60.0 14400 < th dose independent rect. 20 1
100 14.40 radiation 20.0 14400 > th dose independent rect. 17 1
151 14.40 humidity 60.0 14400 < th dose dependent rect. 6 1
153 14.40 humidity 60.0 14400 < th dose dependent rect. 20 1
155 14.40 radiation 20.0 14400 > th dose dependent rect. 17 1
212 14.41 atmosphere 1005.0 270 > th dose dependent rect. 22 10
227 14.46 precipitation 0.1 270 > th dose independent rect. 19 9
230 14.50 humidity 90.0 720 > th dose independent rect. 20 5
237 14.53 humidity 80.0 1440 > th dose independent rect. 11 3
240 14.53 humidity 90.0 720 > th dose dependent sin 16 NA
242 14.53 atmosphere 1005.0 10 > th dose dependent rect. 23 10
256 14.55 humidity 90.0 270 > th dose dependent rect. 17 16
264 14.56 humidity 90.0 270 > th dose dependent rect. 4 23
265 14.57 wind 1.0 14400 > th dose independent rect. 1 1
273 14.57 humidity 90.0 270 > th dose dependent rect. 12 20
284 14.59 radiation 1.0 1440 > th dose independent rect. 9 1
296 14.61 humidity 80.0 1440 < th dose independent rect. 11 3
316 14.63 precipitation 0.1 270 > th dose independent sin 11 NA
317 14.63 atmosphere 1005.0 90 > th dose dependent rect. 23 12
328 14.65 humidity 90.0 14400 < th dose dependent rect. 6 1
333 14.66 wind 1.0 14400 < th dose independent rect. 1 1
350 14.67 precipitation 0.1 270 < th dose independent sin 11 NA
352 14.67 humidity 90.0 270 > th dose dependent no NA NA
353 14.67 precipitation 0.1 270 < th dose dependent sin 11 NA
363 14.68 wind 1.0 720 < th dose independent rect. 23 1
369 14.68 humidity 50.0 14400 > th dose dependent rect. 4 3
390 14.70 temperature 20.0 1440 < th dose independent rect. 23 1
392 14.70 atmosphere 1005.0 10 > th dose dependent sin 7 NA
395 14.70 humidity 90.0 270 > th dose dependent rect. 23 23
397 14.71 temperature 20.0 1440 > th dose independent rect. 23 1
398 14.71 humidity 90.0 720 < th dose independent rect. 20 4
399 14.71 humidity 90.0 720 < th dose independent rect. 19 6
436 14.74 temperature 20.0 1440 > th dose independent rect. 22 4
439 14.74 humidity 90.0 270 > th dose dependent sin 11 NA
470 14.77 humidity 90.0 720 > th dose independent rect. 18 12
472 14.77 precipitation 0.1 270 > th dose dependent sin 10 NA
595 14.86 temperature 20.0 1440 > th dose independent rect. 1 1
628 14.88 wind 3.0 14400 > th dose independent rect. 18 13
629 14.88 wind 3.0 14400 < th dose independent rect. 18 13
637 14.88 humidity 90.0 30 > th dose dependent rect. 24 22
657 14.89 humidity 50.0 720 > th dose dependent rect. 15 15
666 14.90 atmosphere 1005.0 720 > th dose independent rect. 19 6
668 14.90 atmosphere 1005.0 30 > th dose independent rect. 23 10
697 14.92 wind 3.0 14400 > th dose independent sin 11 NA
712 14.92 humidity 90.0 14400 < th dose dependent rect. 22 10
721 14.93 wind 3.0 14400 < th dose independent sin 11 NA
723 14.93 temperature 20.0 1440 < th dose independent rect. 1 1
739 14.93 precipitation 0.1 270 > th dose dependent rect. 19 10
744 14.93 precipitation 0.1 270 > th dose dependent rect. 19 14
748 14.94 humidity 90.0 720 > th dose independent sin 14 NA
749 14.94 temperature 20.0 1440 > th dose independent rect. 6 1
756 14.94 temperature 20.0 1440 > th dose independent rect. 21 10
788 14.95 temperature 20.0 1440 < th dose independent rect. 21 10
837 14.96 wind 3.0 14400 < th dose dependent rect. 21 2
841 14.96 humidity 80.0 1440 > th dose dependent rect. 11 3
853 14.97 wind 7.0 4320 > th dose independent rect. 18 1
859 14.97 temperature 20.0 10 > th dose independent rect. 20 10
888 14.98 temperature 20.0 1440 > th dose independent sin 11 NA
890 14.98 wind 3.0 14400 < th dose independent rect. 1 6
893 14.98 wind 3.0 14400 < th dose independent rect. 22 9
901 14.98 atmosphere 1005.0 270 > th dose independent rect. 20 11
908 14.98 atmosphere 1010.0 10 < th dose dependent sin 8 NA
934 14.99 temperature 20.0 1440 < th dose independent sin 11 NA
977 15.00 atmosphere 1005.0 720 < th dose independent rect. 19 6
978 15.00 wind 3.0 14400 > th dose independent rect. 22 9