BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0736500 Os02g0736500|AK065166
         (671 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os02g0736500  Nicastrin family protein                           1281   0.0  

>Os02g0736500 Nicastrin family protein
          Length = 671

 Score = 1281 bits (3316), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 631/671 (94%), Positives = 631/671 (94%)

Query: 1   MGGGSTXXXXXXXXXXXXXXXXXXXSGDAATLESVPDLVKAMYINVESFPCVRLLNHSGQ 60
           MGGGST                   SGDAATLESVPDLVKAMYINVESFPCVRLLNHSGQ
Sbjct: 1   MGGGSTAPLLAAFACVFLAVFPPVASGDAATLESVPDLVKAMYINVESFPCVRLLNHSGQ 60

Query: 61  VGCSNPGHDKVIAPIVRFGNRNDQLVQPSAVLLPLNQMTDFFLRVSNDPELYRKIAGVLV 120
           VGCSNPGHDKVIAPIVRFGNRNDQLVQPSAVLLPLNQMTDFFLRVSNDPELYRKIAGVLV
Sbjct: 61  VGCSNPGHDKVIAPIVRFGNRNDQLVQPSAVLLPLNQMTDFFLRVSNDPELYRKIAGVLV 120

Query: 121 EANGVDNMLEFSPDRKFPQQAFAPYSNLSHHWNPTGSGIMWNKYDFPVFLLSEESTQTLQ 180
           EANGVDNMLEFSPDRKFPQQAFAPYSNLSHHWNPTGSGIMWNKYDFPVFLLSEESTQTLQ
Sbjct: 121 EANGVDNMLEFSPDRKFPQQAFAPYSNLSHHWNPTGSGIMWNKYDFPVFLLSEESTQTLQ 180

Query: 181 NLADKNEKSANGYLANVAEFDLVMQTTKAGTHDSESCLREQSCLPLGGQSVWTSLPPISN 240
           NLADKNEKSANGYLANVAEFDLVMQTTKAGTHDSESCLREQSCLPLGGQSVWTSLPPISN
Sbjct: 181 NLADKNEKSANGYLANVAEFDLVMQTTKAGTHDSESCLREQSCLPLGGQSVWTSLPPISN 240

Query: 241 SSTKHQKPIIMVTASQDSASFFRDRSLGADSPISGLIALLTAVDALSHLHDISNLKKQLV 300
           SSTKHQKPIIMVTASQDSASFFRDRSLGADSPISGLIALLTAVDALSHLHDISNLKKQLV
Sbjct: 241 SSTKHQKPIIMVTASQDSASFFRDRSLGADSPISGLIALLTAVDALSHLHDISNLKKQLV 300

Query: 301 FAVFNGEAWGYLGSRKFLQELDQGADSVNGISSLLIDQVLEIGSVGKAISQGYPLFYAHA 360
           FAVFNGEAWGYLGSRKFLQELDQGADSVNGISSLLIDQVLEIGSVGKAISQGYPLFYAHA
Sbjct: 301 FAVFNGEAWGYLGSRKFLQELDQGADSVNGISSLLIDQVLEIGSVGKAISQGYPLFYAHA 360

Query: 361 AGNSSISMKMVDALQSASESLGSDNVKVKPAASSNPGVPPSSLMSFLGKNSSTPGLVLED 420
           AGNSSISMKMVDALQSASESLGSDNVKVKPAASSNPGVPPSSLMSFLGKNSSTPGLVLED
Sbjct: 361 AGNSSISMKMVDALQSASESLGSDNVKVKPAASSNPGVPPSSLMSFLGKNSSTPGLVLED 420

Query: 421 FDSQFSNRFYHSTLDGPANVNXXXXXXXXXXXXXXXXXXXXXDLPIDLITLNTIKVNVSL 480
           FDSQFSNRFYHSTLDGPANVN                     DLPIDLITLNTIKVNVSL
Sbjct: 421 FDSQFSNRFYHSTLDGPANVNSSSIAAAAALIARSLYILASADLPIDLITLNTIKVNVSL 480

Query: 481 VEELIGCLLKCDPGLSCGIVKSFISPSNSCPSHYVGVFQDLPAGTQFPSYADDISRFIWN 540
           VEELIGCLLKCDPGLSCGIVKSFISPSNSCPSHYVGVFQDLPAGTQFPSYADDISRFIWN
Sbjct: 481 VEELIGCLLKCDPGLSCGIVKSFISPSNSCPSHYVGVFQDLPAGTQFPSYADDISRFIWN 540

Query: 541 FLADRTSSLAGNSSSCTGQCHDEGEICVGAEVEGGGRCVVSTTRYVPAYSTRLKFEDNVW 600
           FLADRTSSLAGNSSSCTGQCHDEGEICVGAEVEGGGRCVVSTTRYVPAYSTRLKFEDNVW
Sbjct: 541 FLADRTSSLAGNSSSCTGQCHDEGEICVGAEVEGGGRCVVSTTRYVPAYSTRLKFEDNVW 600

Query: 601 HVLPVNSSDPFSAADPVWTESFWNTIGLRVYAVQATSYDWLVLLIGIIITVASYFAVIVG 660
           HVLPVNSSDPFSAADPVWTESFWNTIGLRVYAVQATSYDWLVLLIGIIITVASYFAVIVG
Sbjct: 601 HVLPVNSSDPFSAADPVWTESFWNTIGLRVYAVQATSYDWLVLLIGIIITVASYFAVIVG 660

Query: 661 RSYISKIIKRD 671
           RSYISKIIKRD
Sbjct: 661 RSYISKIIKRD 671



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,663,712
Number of extensions: 889954
Number of successful extensions: 2086
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2085
Number of HSP's successfully gapped: 1
Length of query: 671
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 564
Effective length of database: 11,448,903
Effective search space: 6457181292
Effective search space used: 6457181292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)