BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0736500 Os02g0736500|AK065166
         (671 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52640.2  | chr3:19515078-19520290 REVERSE LENGTH=706          677   0.0  

>AT3G52640.2 | chr3:19515078-19520290 REVERSE LENGTH=706
          Length = 705

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/677 (49%), Positives = 443/677 (65%), Gaps = 34/677 (5%)

Query: 28  DAATLESVPDLVKAMYINVESFPCVRLLNHSGQVGCSNPGHDKVIAPIVRFGNRNDQLVQ 87
           +  ++ESVPDL K MY+ V+ FPCVRLLN SG++GCSNPG +KV+API++  +  D LVQ
Sbjct: 30  EITSIESVPDLQKLMYVAVDGFPCVRLLNLSGEIGCSNPGINKVVAPIIKLKDVKD-LVQ 88

Query: 88  PSAVLLPLNQMTDFFLRVSNDPELYRKIAGVLVEA--NGVDNMLEFSPDRKFPQQAFAPY 145
           P  +L+  ++M DFF RVS D     KI GVLVE+  N    +  FSPD++FPQ  F+PY
Sbjct: 89  PHTILVTADEMEDFFTRVSTDLSFASKIGGVLVESGSNFQQKLKGFSPDKRFPQAQFSPY 148

Query: 146 SNLSHHWNPTGSGIMWNKYDFPVFLLSEESTQTLQNLADKNEKSANGYLANVAEFDLVMQ 205
            N+ + WN   S IMW  Y+FPV+LLSE     +  +  K +     Y ++VAEF++VM+
Sbjct: 149 ENVEYKWNSAASSIMWRNYNFPVYLLSESGISAVHEILSKKKMKHGTYTSDVAEFNMVME 208

Query: 206 TTKAGTHDSESCLREQSCLPLGGQSVWTSLPPISNSSTKHQKPIIMVTASQDSASFFRDR 265
           TTKAGTH+SE+CL+E +CLPLGG SVW+SLPPIS SS+ ++KP+++  AS D+ASFFRD+
Sbjct: 209 TTKAGTHNSEACLQEGTCLPLGGYSVWSSLPPISVSSSNNRKPVVLTVASMDTASFFRDK 268

Query: 266 SLGADSPISGLIALLTAVDALSHLHDISNLKKQLVFAVFNGEAWGYLGSRKFLQELDQGA 325
           S GADSPISGL+ALL AVDALS +  ISNLKKQLVF V  GE WGYLGSR+FL ELD  +
Sbjct: 269 SFGADSPISGLVALLGAVDALSRVDGISNLKKQLVFLVLTGETWGYLGSRRFLHELDLHS 328

Query: 326 DSVNGISSLLIDQVLEIGSVGKAISQGYPLFYAHAAGNSSISMKMVDALQSASESLGSDN 385
           D+V G+S+  I+ VLEIGSVGK +S G   F+AH    SS++   +DAL+ A +SL S N
Sbjct: 329 DAVAGLSNTSIETVLEIGSVGKGLSGGINTFFAHKTRVSSVTNMTLDALKIAQDSLASKN 388

Query: 386 VKVKPAASSNPGVPPSSLMSFLGKNSSTPGLVLEDFDSQFSNRFYHSTLDG--------- 436
           +K+  A ++NPG+PPSSLM+F+ KN  T  +VLEDFD+ F N+FYHS LD          
Sbjct: 389 IKILSADTANPGIPPSSLMAFMRKNPQTSAVVLEDFDTNFVNKFYHSHLDDLCKKSHSLS 448

Query: 437 --------------------PANVNXXXXXXXXXXXXXXXXXXXXXDLPIDLITLNTIKV 476
                                AN+N                     +       L +I V
Sbjct: 449 FSSFRSKPHFALLIPFWCCIAANINSSSVVAAASVVARTLYILASDNKDTSNSALGSIHV 508

Query: 477 NVSLVEELIGCLLKCDPGLSCGIVKSFISPSNSCPSHYVGVFQDLPAGTQFPSYADDISR 536
           N S VEEL+ CLL C+PGLSC +VK +ISP+N+CP +Y GV    P+   +  Y  D+SR
Sbjct: 509 NASFVEELLTCLLACEPGLSCNLVKDYISPTNTCPGNYAGVILGEPSSKPYLGYVGDVSR 568

Query: 537 FIWNFLADRTSSLAGNSSS-CT-GQCHDEGEICVGAEVEGGGRCVVSTTRYVPAYSTRLK 594
           F+WNFLAD+TS   GN++S C+ G C    E+C+ AE    G CVVSTTRYVPAYSTRLK
Sbjct: 569 FLWNFLADKTSVQKGNTTSVCSKGVCSKTDEVCIKAESNKEGTCVVSTTRYVPAYSTRLK 628

Query: 595 FEDNVWHVLPVNSSDPFSAADPVWTESFWNTIGLRVYAVQATSYDWLVLLIGIIITVASY 654
           + D  W +LP NSSD     DPVWTES W+T+ + VY VQ ++YD  VL+ GI +T  +Y
Sbjct: 629 YNDGAWTILPQNSSDSMGMVDPVWTESNWDTLRVHVYTVQHSAYDNAVLVAGITVTTLAY 688

Query: 655 FAVIVGRSYISKIIKRD 671
             ++  +S I+K +K+D
Sbjct: 689 IGILAAKSIITKALKQD 705



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.133    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 13,988,589
Number of extensions: 590203
Number of successful extensions: 1449
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1446
Number of HSP's successfully gapped: 3
Length of query: 671
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 566
Effective length of database: 8,227,889
Effective search space: 4656985174
Effective search space used: 4656985174
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)