Os02g0723700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : SNF5/SMARCB1/INI1 family protein.
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Os02g0723700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : SNF5/SMARCB1/INI1 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.02 | 0.21 | 11.4 | -0.797 | 0.166 | -0.228 | 0.0598 | 1.14 | -0.0345 | 5.32 | 23.9 | 703 | -- | -- |
| 21.08 | 0.214 | 11.4 | -0.656 | 0.152 | -0.534 | 0.159 | -- | 0.00917 | 5.75 | 20.93 | 845 | -- | -- |
| 20.02 | 0.208 | 11.4 | -0.798 | 0.169 | -0.228 | -- | 1.16 | -0.0345 | 5.45 | 23.9 | 687 | -- | -- |
| 21.14 | 0.214 | 11.4 | -0.652 | 0.157 | -0.541 | -- | -- | 0.00611 | 5.85 | 21 | 844 | -- | -- |
| 21.38 | 0.215 | 11.4 | -0.807 | -- | -0.256 | -- | 1.12 | -0.0362 | -- | 23.7 | 1054 | -- | -- |
| 23.69 | 0.228 | 11.4 | -0.521 | 0.158 | -- | 0.168 | -- | 0.0657 | 4.74 | -- | -- | -- | -- |
| 23.76 | 0.228 | 11.4 | -0.522 | 0.159 | -- | -- | -- | 0.0648 | 4.77 | -- | -- | -- | -- |
| 22.34 | 0.22 | 11.4 | -0.695 | -- | -0.529 | -- | -- | 0.00178 | -- | 19.5 | 2392 | -- | -- |
| 30.53 | 0.257 | 11.4 | -- | 0.151 | -0.282 | -- | -- | 0.117 | 5.15 | 17.9 | 537 | -- | -- |
| 25.1 | 0.234 | 11.4 | -0.516 | -- | -- | -- | -- | 0.0689 | -- | -- | -- | -- | -- |
| 30.95 | 0.26 | 11.4 | -- | 0.149 | -- | -- | -- | 0.123 | 4.87 | -- | -- | -- | -- |
| 31.51 | 0.261 | 11.4 | -- | -- | 0.199 | -- | -- | 0.148 | -- | 35.51 | 199 | -- | -- |
| 32.13 | 0.265 | 11.4 | -- | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 18.86 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 2 | 7 |
| 4 | 18.88 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 3 | 5 |
| 18 | 18.96 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 4 | 3 |
| 33 | 19.04 | humidity | 90.0 | 14400 | > th | dose dependent | sin | 7 | NA |
| 35 | 19.05 | temperature | 20.0 | 720 | > th | dose dependent | sin | 6 | NA |
| 40 | 19.07 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 23 | 14 |
| 45 | 19.10 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 66 | 19.17 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 21 | 18 |
| 68 | 19.18 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 1 | 12 |
| 118 | 19.30 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 131 | 19.34 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 11 |
| 137 | 19.34 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 3 | 17 |
| 165 | 19.40 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 181 | 19.41 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 182 | 19.41 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 22 | 5 |
| 282 | 19.55 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 10 |
| 300 | 19.56 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 8 | 1 |
| 318 | 19.58 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 2 | 7 |
| 319 | 19.58 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 320 | 19.58 | temperature | 25.0 | 1440 | < th | dose dependent | rect. | 7 | 3 |
| 335 | 19.60 | temperature | 20.0 | 720 | > th | dose independent | rect. | 23 | 16 |
| 366 | 19.64 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 429 | 19.70 | wind | 3.0 | 43200 | > th | dose independent | rect. | 18 | 3 |
| 431 | 19.70 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 11 |
| 447 | 19.72 | wind | 3.0 | 43200 | < th | dose independent | rect. | 18 | 3 |
| 494 | 19.76 | humidity | 90.0 | 14400 | > th | dose independent | sin | 8 | NA |
| 514 | 19.78 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 12 | 23 |
| 540 | 19.81 | humidity | 90.0 | 14400 | > th | dose dependent | no | NA | NA |
| 596 | 19.87 | temperature | 20.0 | 720 | > th | dose independent | sin | 5 | NA |
| 637 | 19.92 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 649 | 19.93 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 702 | 19.95 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 19 | 22 |
| 757 | 20.00 | wind | 3.0 | 43200 | > th | dose independent | rect. | 15 | 7 |
| 776 | 20.01 | wind | 3.0 | 43200 | < th | dose independent | rect. | 15 | 7 |
| 780 | 20.01 | wind | 3.0 | 43200 | < th | dose independent | rect. | 13 | 9 |
| 784 | 20.01 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 7 | 2 |
| 787 | 20.01 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 822 | 20.03 | wind | 3.0 | 43200 | < th | dose independent | rect. | 17 | 5 |
| 842 | 20.04 | wind | 3.0 | 43200 | > th | dose independent | rect. | 13 | 11 |
| 877 | 20.06 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 932 | 20.09 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 6 | 23 |
| 951 | 20.11 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 954 | 20.11 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 964 | 20.12 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 968 | 20.12 | radiation | 1.0 | 43200 | > th | dose independent | rect. | 6 | 9 |
| 969 | 20.12 | radiation | 1.0 | 43200 | < th | dose independent | rect. | 6 | 9 |
| 977 | 20.12 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 978 | 20.12 | temperature | 10.0 | 43200 | > th | dose dependent | rect. | 11 | 1 |
| 980 | 20.12 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 8 | 1 |