BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0723700 Os02g0723700|AK073256
(232 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0723700 SNF5/SMARCB1/INI1 family protein 476 e-135
AK105251 468 e-132
>Os02g0723700 SNF5/SMARCB1/INI1 family protein
Length = 232
Score = 476 bits (1226), Expect = e-135, Method: Compositional matrix adjust.
Identities = 232/232 (100%), Positives = 232/232 (100%)
Query: 1 ARPRRRPTRDNLVPIRVDVEVDGQRYRDAFTWNPCDPDSEIISFAKRTAKDLKLPANFVP 60
ARPRRRPTRDNLVPIRVDVEVDGQRYRDAFTWNPCDPDSEIISFAKRTAKDLKLPANFVP
Sbjct: 1 ARPRRRPTRDNLVPIRVDVEVDGQRYRDAFTWNPCDPDSEIISFAKRTAKDLKLPANFVP 60
Query: 61 QMLHSIQGQLTEFRSYEGEEMQIREKIVPLKIDLRINNTVIRDQFLWDIGNLDSDPEEFA 120
QMLHSIQGQLTEFRSYEGEEMQIREKIVPLKIDLRINNTVIRDQFLWDIGNLDSDPEEFA
Sbjct: 61 QMLHSIQGQLTEFRSYEGEEMQIREKIVPLKIDLRINNTVIRDQFLWDIGNLDSDPEEFA 120
Query: 121 RTLCDDLNITDPEVGPAIAVSIREQLYEIASQSVSAMREAARVSKKGRRAPEFASNSKAM 180
RTLCDDLNITDPEVGPAIAVSIREQLYEIASQSVSAMREAARVSKKGRRAPEFASNSKAM
Sbjct: 121 RTLCDDLNITDPEVGPAIAVSIREQLYEIASQSVSAMREAARVSKKGRRAPEFASNSKAM 180
Query: 181 NNSLDLFKYFGSKGSVVRKRKEWYLYEPVVDVITNEEVGVTDATEEINSRNA 232
NNSLDLFKYFGSKGSVVRKRKEWYLYEPVVDVITNEEVGVTDATEEINSRNA
Sbjct: 181 NNSLDLFKYFGSKGSVVRKRKEWYLYEPVVDVITNEEVGVTDATEEINSRNA 232
>AK105251
Length = 244
Score = 468 bits (1204), Expect = e-132, Method: Compositional matrix adjust.
Identities = 230/236 (97%), Positives = 230/236 (97%), Gaps = 4/236 (1%)
Query: 1 ARPR----RRPTRDNLVPIRVDVEVDGQRYRDAFTWNPCDPDSEIISFAKRTAKDLKLPA 56
ARP R PTRDNLVPIRVDVEVDGQRYRDAFTWNPCDPDSEIISFAKRTAKDLKLPA
Sbjct: 9 ARPSSVKFRMPTRDNLVPIRVDVEVDGQRYRDAFTWNPCDPDSEIISFAKRTAKDLKLPA 68
Query: 57 NFVPQMLHSIQGQLTEFRSYEGEEMQIREKIVPLKIDLRINNTVIRDQFLWDIGNLDSDP 116
NFVPQMLHSIQGQLTEFRSYEGEEMQIREKIVPLKIDLRINNTVIRDQFLWDIGNLDSDP
Sbjct: 69 NFVPQMLHSIQGQLTEFRSYEGEEMQIREKIVPLKIDLRINNTVIRDQFLWDIGNLDSDP 128
Query: 117 EEFARTLCDDLNITDPEVGPAIAVSIREQLYEIASQSVSAMREAARVSKKGRRAPEFASN 176
EEFARTLCDDLNITDPEVGPAIAVSIREQLYEIASQSVSAMREAARVSKKGRRAPEFASN
Sbjct: 129 EEFARTLCDDLNITDPEVGPAIAVSIREQLYEIASQSVSAMREAARVSKKGRRAPEFASN 188
Query: 177 SKAMNNSLDLFKYFGSKGSVVRKRKEWYLYEPVVDVITNEEVGVTDATEEINSRNA 232
SKAMNNSLDLFKYFGSKGSVVRKRKEWYLYEPVVDVITNEEVGVTDATEEINSRNA
Sbjct: 189 SKAMNNSLDLFKYFGSKGSVVRKRKEWYLYEPVVDVITNEEVGVTDATEEINSRNA 244
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 7,530,339
Number of extensions: 297258
Number of successful extensions: 759
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 755
Number of HSP's successfully gapped: 2
Length of query: 232
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 134
Effective length of database: 11,918,829
Effective search space: 1597123086
Effective search space used: 1597123086
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 154 (63.9 bits)