BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os02g0723700 Os02g0723700|AK073256
         (232 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G17590.2  | chr3:6017313-6019591 REVERSE LENGTH=243            300   3e-82

>AT3G17590.2 | chr3:6017313-6019591 REVERSE LENGTH=243
          Length = 242

 Score =  300 bits (769), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 141/225 (62%), Positives = 182/225 (80%), Gaps = 1/225 (0%)

Query: 6   RPTRDNLVPIRVDVEVDGQRYRDAFTWNPCDPDSEIISFAKRTAKDLKLPANFVPQMLHS 65
           RPT +NLVPIR+D++ +GQRY+DAFTWNP DPD+E++ FAKRT KDLKLP  FV Q+  S
Sbjct: 19  RPTAENLVPIRLDIQFEGQRYKDAFTWNPSDPDNEVVIFAKRTVKDLKLPYAFVTQIAQS 78

Query: 66  IQGQLTEFRSYEGEEMQIREKIVPLKIDLRINNTVIRDQFLWDIGNLDSDPEEFARTLCD 125
           IQ QL++FR+YEG++M   EKI+P+K+DLR+N+T+I+DQFLWD+ N +SDPEEFARTLC 
Sbjct: 79  IQSQLSDFRAYEGQDMYTGEKIIPIKLDLRVNHTLIKDQFLWDLNNFESDPEEFARTLCK 138

Query: 126 DLNITDPEVGPAIAVSIREQLYEIASQSVSAMREAARVSKKGRRAPEFASNSKAMNNSLD 185
           DL + DPEVGPA+A +IREQLYEIA QSV++ RE +R+SKKGRR  +  S SKA   S+D
Sbjct: 139 DLGVEDPEVGPAVAFAIREQLYEIAIQSVASARE-SRLSKKGRRGSDHGSASKASGLSMD 197

Query: 186 LFKYFGSKGSVVRKRKEWYLYEPVVDVITNEEVGVTDATEEINSR 230
           L K F  K SVVRKRK+  +YEPVVD++T+EEV   +A EE ++R
Sbjct: 198 LMKLFSFKSSVVRKRKDLDVYEPVVDLLTSEEVDALEAREERHAR 242



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,924,802
Number of extensions: 197893
Number of successful extensions: 510
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 507
Number of HSP's successfully gapped: 1
Length of query: 232
Length of database: 11,106,569
Length adjustment: 95
Effective length of query: 137
Effective length of database: 8,502,049
Effective search space: 1164780713
Effective search space used: 1164780713
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 110 (47.0 bits)