Os02g0714300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : AT-rich interaction region domain containing protein.
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Os02g0714300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : AT-rich interaction region domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.23 | 0.294 | 9.46 | 0.107 | 0.942 | 0.897 | -0.264 | 0.857 | -0.35 | 19.8 | 22.43 | 365 | -- | -- |
| 39.85 | 0.294 | 9.45 | 0.201 | 0.931 | 0.73 | -0.486 | -- | -0.323 | 19.8 | 22.96 | 375 | -- | -- |
| 39.4 | 0.292 | 9.47 | 0.098 | 0.941 | 0.881 | -- | 0.922 | -0.351 | 19.8 | 22.66 | 363 | -- | -- |
| 40.22 | 0.295 | 9.45 | 0.192 | 0.933 | 0.694 | -- | -- | -0.336 | 19.8 | 22.9 | 361 | -- | -- |
| 81.47 | 0.423 | 9.44 | 0.093 | -- | 0.83 | -- | 0.686 | -0.368 | -- | 22.66 | 363 | -- | -- |
| 45.16 | 0.315 | 9.47 | 0.021 | 0.893 | -- | -0.361 | -- | -0.431 | 20 | -- | -- | -- | -- |
| 45.54 | 0.316 | 9.47 | 0.0307 | 0.893 | -- | -- | -- | -0.431 | 20 | -- | -- | -- | -- |
| 81.96 | 0.424 | 9.43 | 0.162 | -- | 0.725 | -- | -- | -0.352 | -- | 22.9 | 361 | -- | -- |
| 41.05 | 0.298 | 9.46 | -- | 0.927 | 0.594 | -- | -- | -0.366 | 19.9 | 23 | 369 | -- | -- |
| 89.01 | 0.441 | 9.45 | 0.0216 | -- | -- | -- | -- | -0.443 | -- | -- | -- | -- | -- |
| 45.56 | 0.316 | 9.47 | -- | 0.893 | -- | -- | -- | -0.435 | 20 | -- | -- | -- | -- |
| 82.56 | 0.425 | 9.43 | -- | -- | 0.664 | -- | -- | -0.375 | -- | 23 | 369 | -- | -- |
| 89.02 | 0.44 | 9.45 | -- | -- | -- | -- | -- | -0.445 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 37.30 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 2 | 37.37 | wind | 3 | 14400 | < th | dose dependent | rect. | 6 | 3 |
| 3 | 37.40 | wind | 1 | 14400 | < th | dose dependent | rect. | 20 | 16 |
| 17 | 37.49 | wind | 1 | 14400 | < th | dose dependent | rect. | 5 | 7 |
| 21 | 37.51 | wind | 3 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 32 | 37.58 | wind | 3 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 38 | 37.60 | wind | 3 | 14400 | < th | dose independent | rect. | 5 | 2 |
| 43 | 37.61 | wind | 3 | 14400 | > th | dose independent | rect. | 6 | 3 |
| 49 | 37.62 | wind | 3 | 14400 | > th | dose independent | rect. | 20 | 12 |
| 57 | 37.65 | wind | 1 | 14400 | > th | dose dependent | rect. | 6 | 1 |
| 78 | 37.69 | wind | 3 | 14400 | < th | dose independent | rect. | 20 | 12 |
| 97 | 37.74 | wind | 5 | 14400 | < th | dose dependent | rect. | 20 | 12 |
| 110 | 37.78 | wind | 1 | 14400 | < th | dose dependent | sin | 9 | NA |
| 145 | 37.86 | wind | 3 | 14400 | > th | dose independent | sin | 10 | NA |
| 195 | 37.93 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 206 | 37.94 | wind | 3 | 14400 | < th | dose independent | sin | 10 | NA |
| 216 | 37.95 | wind | 1 | 14400 | < th | dose independent | rect. | 21 | 16 |
| 226 | 37.96 | wind | 1 | 14400 | < th | dose independent | rect. | 5 | 7 |
| 251 | 37.98 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 263 | 37.99 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 274 | 38.00 | wind | 1 | 14400 | > th | dose dependent | rect. | 21 | 11 |
| 297 | 38.02 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 308 | 38.03 | wind | 1 | 14400 | > th | dose dependent | rect. | 19 | 13 |
| 312 | 38.04 | wind | 3 | 14400 | > th | dose independent | rect. | 1 | 9 |
| 324 | 38.05 | wind | 5 | 14400 | < th | dose dependent | sin | 10 | NA |
| 348 | 38.07 | wind | 3 | 14400 | < th | dose independent | rect. | 1 | 9 |
| 395 | 38.10 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 22 |
| 655 | 38.31 | wind | 1 | 14400 | < th | dose dependent | no | NA | NA |
| 663 | 38.31 | wind | 1 | 14400 | < th | dose dependent | rect. | 1 | 23 |
| 664 | 38.31 | wind | 1 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 721 | 38.35 | wind | 1 | 14400 | < th | dose dependent | rect. | 12 | 23 |
| 732 | 38.36 | wind | 1 | 14400 | > th | dose dependent | sin | 10 | NA |
| 766 | 38.38 | wind | 1 | 14400 | < th | dose dependent | rect. | 4 | 19 |
| 783 | 38.40 | wind | 1 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 794 | 38.40 | wind | 1 | 14400 | < th | dose dependent | rect. | 8 | 23 |
| 971 | 38.52 | wind | 1 | 14400 | < th | dose independent | rect. | 4 | 22 |
| 982 | 38.53 | wind | 1 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 988 | 38.53 | humidity | 50 | 43200 | < th | dose independent | rect. | 16 | 15 |