BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0714300 Os02g0714300|AK107036
(486 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G17410.1 | chr2:7559869-7563474 FORWARD LENGTH=787 365 e-101
AT1G76510.3 | chr1:28708681-28712498 REVERSE LENGTH=494 326 2e-89
AT1G20910.1 | chr1:7277209-7280635 REVERSE LENGTH=399 303 1e-82
AT1G76110.1 | chr1:28555287-28557465 REVERSE LENGTH=339 62 8e-10
AT1G04880.1 | chr1:1376106-1378264 REVERSE LENGTH=449 60 3e-09
>AT2G17410.1 | chr2:7559869-7563474 FORWARD LENGTH=787
Length = 786
Score = 365 bits (936), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/309 (58%), Positives = 220/309 (71%), Gaps = 19/309 (6%)
Query: 183 DPFLDGDDSGTEEEQAAFMVELERFHREHGLEFKPPKFYGKGLNCLKLWRQVAHLGGHEQ 242
D DG++SGTEE+Q+AFM EL+ F RE ++FKPPKFYG+GLNCLKLWR V LGG+++
Sbjct: 483 DDASDGNESGTEEDQSAFMKELDSFFRERNMDFKPPKFYGEGLNCLKLWRAVTRLGGYDK 542
Query: 243 VTICKLWRQVGETFRPPKTCTTVSWSFRIFYEKALLEYEKYKVRTGQLQVPLSALPQPGG 302
VT KLWRQVGE+FRPPKTCTTVSW+FR FYEKALLEYE++KV G+LQ+PL +P
Sbjct: 543 VTGSKLWRQVGESFRPPKTCTTVSWTFRGFYEKALLEYERHKVSEGELQIPLPLELEPMN 602
Query: 303 TGREIGMNQXXXXXXXXXXXXXXMQGWHAHRLLTNGIYGDQMLKEKDSVPSSSR------ 356
I MQGWH+ RL NG D +K+K+ V R
Sbjct: 603 ----IDNQASGSGRARRDAASRAMQGWHSQRLNGNGEVSDPAIKDKNLVLHQKREKQIGT 658
Query: 357 --GVLKRKKASS--PECAIKVSRTKINKSQDDSMVTDVGEPAEWVKINVRQTKDCFEIYA 412
G+LKRK+A+ + AI VS++ + D V DVG PA+WVKINV++T+DCFE+YA
Sbjct: 659 TPGLLKRKRAAEHGAKNAIHVSKSML-----DVTVVDVGPPADWVKINVQRTQDCFEVYA 713
Query: 413 LVPGLLREEVHVQSDPAGRLVITGDPEQPDNPWGITPFKKVVNLPLRIDPHQTSAVVTLH 472
LVPGL+REEV VQSDPAGRLVI+G+PE P NPWG TPFKKVV+LP RIDPH TSAVVTL+
Sbjct: 714 LVPGLVREEVRVQSDPAGRLVISGEPENPMNPWGATPFKKVVSLPTRIDPHHTSAVVTLN 773
Query: 473 GQLFVRAPF 481
GQLFVR P
Sbjct: 774 GQLFVRVPL 782
>AT1G76510.3 | chr1:28708681-28712498 REVERSE LENGTH=494
Length = 493
Score = 326 bits (835), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 174/328 (53%), Positives = 210/328 (64%), Gaps = 34/328 (10%)
Query: 189 DDSGTEEEQAAFMVELERFHREHGLEFKPPKFYGKGLNCLKLWRQVAHLGGHEQVTICKL 248
D++G ++Q AF+ E+E F++E+ LEFK PKFYG+ LNCLKLWR V LGG++ VT KL
Sbjct: 137 DEAGAPQDQEAFIKEVEAFNKENFLEFKAPKFYGQPLNCLKLWRAVIKLGGYDVVTTSKL 196
Query: 249 WRQVGETFRPPKTCTTVSWSFRIFYEK-----------------------ALLEYEKYKV 285
WRQVGE+F PPKTCTTVSW+FRIFYEK ALLEYEK+
Sbjct: 197 WRQVGESFHPPKTCTTVSWTFRIFYEKVNFIFGLSTEYALILMRLYLFSLALLEYEKHLR 256
Query: 286 RTGQLQVPLSALPQPGGTGREIGMNQXXXX-XXXXXXXXXXMQGWHAHRLLTNGIYGDQM 344
+ G+L +P SA G +E +Q MQGWH+ RLL +G + +
Sbjct: 257 QNGELNLPGSASLPSSGIEKEASSHQASGSGRTRRDAAARAMQGWHSQRLLGSGEVTEPI 316
Query: 345 LKEK--DSVPSSSR----GVLKRKKASSPECAIKVSRTKINKSQDDSMVTDVGEPAEWVK 398
+KEK +S P GV K+K + + K Q + V DVG PA+WVK
Sbjct: 317 VKEKGLNSTPKQKNLKNIGVQKQKTTTGMDLVFSHESEK----QSTAEVIDVGPPADWVK 372
Query: 399 INVRQTKDCFEIYALVPGLLREEVHVQSDPAGRLVITGDPEQPDNPWGITPFKKVVNLPL 458
INVR+TKDCFEI+ALVPGLLREEV VQSDPAGRLVI G PEQ DNPWGITPFKKVVN P
Sbjct: 373 INVRETKDCFEIFALVPGLLREEVRVQSDPAGRLVIAGQPEQLDNPWGITPFKKVVNFPA 432
Query: 459 RIDPHQTSAVVTLHGQLFVRAPFGHADM 486
RIDP TSAVV+LHG+LFVR PF H +M
Sbjct: 433 RIDPLHTSAVVSLHGRLFVRVPFEHREM 460
>AT1G20910.1 | chr1:7277209-7280635 REVERSE LENGTH=399
Length = 398
Score = 303 bits (777), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 158/300 (52%), Positives = 202/300 (67%), Gaps = 11/300 (3%)
Query: 189 DDSGTEEEQAAFMVELERFHREHGLEFKPPKFYGKGLNCLKLWRQVAHLGGHEQVTICKL 248
D++GT EQ AF+ E+E F++E LEFKPPKFYG+ LN LKLWR V +LGG+E VT KL
Sbjct: 101 DEAGTPVEQVAFLREVEAFYKESFLEFKPPKFYGQPLNILKLWRAVVNLGGYEVVTTNKL 160
Query: 249 WRQVGETFRPPKTCTTVSWSFRIFYEKALLEYEKYKVRTGQLQVPLSALPQPGGTGREIG 308
WRQVGE+F PPKTCTTVS++FR FYEKALLEYEK G+L +P S L +E
Sbjct: 161 WRQVGESFNPPKTCTTVSYTFRNFYEKALLEYEKCLRNNGELNLPGSTLILSSSVEKEPS 220
Query: 309 MNQXXXX-XXXXXXXXXXMQGWHAHRLLTNGIYGDQMLKEKDSVPS------SSRGVLKR 361
+Q MQGWHA RL+ +G +K+K + + S G+ K
Sbjct: 221 SHQGSGSGRARRDSAARAMQGWHAQRLVGSGEVTAPAVKDKGLISTPKHKKLKSIGLQKH 280
Query: 362 KKASSPECAIKVSRTKINKSQDDSMVTDVGEPAEWVKINVRQTKDCFEIYALVPGLLREE 421
K+ +S + + T Q + V DVG A+WVKINV+++KD FEI+ALVPGLLR+E
Sbjct: 281 KQQTSMDHVV----TNEADKQLAAEVVDVGPVADWVKINVKESKDSFEIFALVPGLLRKE 336
Query: 422 VHVQSDPAGRLVITGDPEQPDNPWGITPFKKVVNLPLRIDPHQTSAVVTLHGQLFVRAPF 481
V +QSDPAG++VITG PEQ DNPWGITPFKK+V+L RIDP TSAV+++HG+LF+R PF
Sbjct: 337 VRIQSDPAGKVVITGQPEQLDNPWGITPFKKIVDLSARIDPLHTSAVMSMHGRLFIRVPF 396
>AT1G76110.1 | chr1:28555287-28557465 REVERSE LENGTH=339
Length = 338
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 37/117 (31%), Positives = 57/117 (48%), Gaps = 2/117 (1%)
Query: 195 EEQAAFMVELERFHREHGLEFKPPKFYGKGLNCLKLWRQVAHLGGHEQVTICKLWRQVGE 254
++ + F L RFH +F P GK L+ L+ +V GG+E+V + K WR+VG
Sbjct: 39 KDSSVFWDTLRRFHSIMSTKFMIPVIGGKELDLHVLYVEVTRRGGYEKVVVEKKWREVGG 98
Query: 255 TFRPPKTCTTVSWSFRIFYEKALLEYEKYKVRT--GQLQVPLSALPQPGGTGREIGM 309
FR T T+ S+ R Y L YE+ + T G L P++ T +E+ +
Sbjct: 99 VFRFSATTTSASFVLRKHYLNLLFHYEQVHLFTARGPLLHPIATFHANPSTSKEMAL 155
>AT1G04880.1 | chr1:1376106-1378264 REVERSE LENGTH=449
Length = 448
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 48/103 (46%)
Query: 200 FMVELERFHREHGLEFKPPKFYGKGLNCLKLWRQVAHLGGHEQVTICKLWRQVGETFRPP 259
FM LER H G +F P G+ L+ KL+ +V GG ++ + W++V TF P
Sbjct: 35 FMTSLERLHSLLGTKFMVPIIGGRDLDLHKLFVEVTSRGGINKILNERRWKEVTATFVFP 94
Query: 260 KTCTTVSWSFRIFYEKALLEYEKYKVRTGQLQVPLSALPQPGG 302
T T S+ R +Y L YE+ Q+P ++ P
Sbjct: 95 PTATNASYVLRKYYFSLLNNYEQIYFFRSNGQIPPDSMQSPSA 137
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.315 0.133 0.405
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,771,179
Number of extensions: 340498
Number of successful extensions: 560
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 553
Number of HSP's successfully gapped: 5
Length of query: 486
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 384
Effective length of database: 8,310,137
Effective search space: 3191092608
Effective search space used: 3191092608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 114 (48.5 bits)