Os02g0704600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os02g0704600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.42 | 0.324 | 13.3 | 0.699 | 1.36 | -0.844 | 0.51 | 0.537 | 0.161 | 7.66 | 20 | 677 | -- | -- |
| 47.15 | 0.32 | 13.3 | 0.672 | 1.46 | -0.964 | 0.343 | -- | 0.178 | 7.62 | 20.5 | 1232 | -- | -- |
| 47.99 | 0.323 | 13.3 | 0.687 | 1.36 | -0.853 | -- | 0.361 | 0.16 | 7.59 | 20.2 | 759 | -- | -- |
| 47.38 | 0.321 | 13.3 | 0.69 | 1.45 | -0.964 | -- | -- | 0.178 | 7.6 | 20.51 | 1233 | -- | -- |
| 142.31 | 0.556 | 13.3 | 0.724 | -- | -1.05 | -- | 0.242 | 0.239 | -- | 20.8 | 608 | -- | -- |
| 69.6 | 0.391 | 13.4 | 0.284 | 1.46 | -- | 0.404 | -- | -0.0396 | 7.8 | -- | -- | -- | -- |
| 70.07 | 0.392 | 13.4 | 0.294 | 1.46 | -- | -- | -- | -0.0401 | 7.79 | -- | -- | -- | -- |
| 142.15 | 0.555 | 13.3 | 0.727 | -- | -1.15 | -- | -- | 0.249 | -- | 20.74 | 611 | -- | -- |
| 56.96 | 0.352 | 13.4 | -- | 1.36 | -0.704 | -- | -- | 0.0436 | 7.61 | 20.5 | 630 | -- | -- |
| 185.28 | 0.636 | 13.4 | 0.312 | -- | -- | -- | -- | -0.0197 | -- | -- | -- | -- | -- |
| 72.36 | 0.398 | 13.4 | -- | 1.46 | -- | -- | -- | -0.0729 | 7.78 | -- | -- | -- | -- |
| 129.78 | 0.531 | 13.4 | -- | -- | -1.11 | -- | -- | 0.0817 | -- | 27.55 | 538 | -- | -- |
| 187.85 | 0.64 | 13.4 | -- | -- | -- | -- | -- | -0.0543 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.46 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 7 |
| 9 | 45.69 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 7 |
| 31 | 46.25 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 15 |
| 36 | 46.32 | temperature | 20 | 270 | > th | dose independent | rect. | 12 | 21 |
| 47 | 46.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 15 |
| 59 | 46.47 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 62 | 46.51 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 81 | 46.61 | temperature | 20 | 1440 | > th | dose independent | rect. | 6 | 1 |
| 84 | 46.64 | temperature | 20 | 1440 | < th | dose independent | sin | 11 | NA |
| 167 | 46.96 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 22 |
| 219 | 47.17 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 231 | 47.20 | temperature | 20 | 720 | < th | dose independent | rect. | 15 | 20 |
| 243 | 47.23 | temperature | 20 | 720 | < th | dose independent | rect. | 18 | 22 |
| 291 | 47.37 | temperature | 20 | 1440 | < th | dose independent | rect. | 6 | 1 |
| 309 | 47.39 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 23 |
| 356 | 47.49 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 357 | 47.49 | temperature | 20 | 720 | < th | dose independent | rect. | 8 | 23 |
| 358 | 47.50 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 373 | 47.52 | temperature | 20 | 720 | < th | dose independent | rect. | 11 | 23 |
| 389 | 47.56 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 477 | 47.71 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 555 | 47.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 20 |
| 559 | 47.89 | temperature | 20 | 1440 | > th | dose independent | rect. | 8 | 23 |
| 648 | 48.13 | temperature | 20 | 1440 | < th | dose independent | rect. | 8 | 20 |